Tomatoes have a short shelf life thus they pose a big challenge for growers to maintain the quality of tomatoes to increase customer acceptance. In this study, fungi associated with tomato disease symptoms were isolated and the potential of kaffir lime aqueous extract was evaluated in maintaining post-harvest quality of tomatoes. For this purpose, healthy tomatoes were dipped in 10% aqueous kaffir lime extract before evaluating the post-harvest parameters namely weight loss and firmness. A fungus namely Rhizophus stolonifer was isolated from the symptomatic tomatoes. Subsequently, it was confirmed to be pathogenic on healthy tomato fruits with 100% disease severity. Application of aqueous kaffir lime extract showed that tomato fruits dipped in 10% aqueous kaffir lime extract recorded higher weight loss and higher firmness as compared to untreated tomato fruits. The results showed that treatment with this concentration of plant extract did not help to reduce the weight loss, but it retained the firmness of the tomato fruits stored at room temperature at 27+2oC. Higher transpiration process would lead to shrinkage, weight loss, changes in texture and appearance of the fruits. Therefore, this study suggested an increased concentration of aqueous kaffir lime extract as a treatment agent in order to have a better effect in maintaining the quality of tomato fruits.