Complete genome sequence of Planococcus donghaensis JH1T, a pectin-degrading bacterium

See-Too WS 1 , Chua KO 2 , Lim YL 2 , Chen JW 3 , Convey P 4 , Mohd Mohidin TB 5 Show all authors , Yin WF 2 , Chan KG 6

Affiliations 

  • 1 Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia; National Antarctic Research Centre (NARC), Institute of Postgraduate Studies, University of Malaya, 50603 Kuala Lumpur, Malaysia
  • 2 Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia
  • 3 Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia; UM Omics Centre, University of Malaya, Kuala Lumpur, Malaysia
  • 4 National Antarctic Research Centre (NARC), Institute of Postgraduate Studies, University of Malaya, 50603 Kuala Lumpur, Malaysia; British Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge CB3 OET, UK
  • 5 Division of Microbiology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia
  • 6 Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia; UM Omics Centre, University of Malaya, Kuala Lumpur, Malaysia. Electronic address: [email protected]
J Biotechnol, 2017 Jun 20;252:11-14.
PMID: 28483443 DOI: 10.1016/j.jbiotec.2017.05.005

Abstract

The type strain Planococcus donghaensis JH1Tis a psychrotolerant and halotolerant bacterium with starch-degrading ability. Here, we determine the carbon utilization profile of P. donghaensis JH1Tand report the first complete genome of the strain. This study revealed the strain's ability to utilize pectin and d-galacturonic acid, and identified genes responsible for degradation of the polysaccharides. The genomic information provided may serve as a fundamental resource for full exploration of the biotechnological potential of P. donghaensis JH1T.

* Title and MeSH Headings from MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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