Displaying publications 1 - 20 of 47 in total

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  1. Fulltext Study on tar generated from downdraft gasification of oil palm fronds
    Atnaw SM, Kueh SC, Sulaiman SA
    ScientificWorldJournal, 2014;2014:497830.
    PMID: 24526899 DOI: 10.1155/2014/497830
    One of the most challenging issues concerning the gasification of oil palm fronds (OPF) is the presence of tar and particulates formed during the process considering its high volatile matter content. In this study, a tar sampling train custom built based on standard tar sampling protocols was used to quantify the gravimetric concentration of tar (g/Nm3) in syngas produced from downdraft gasification of OPF. The amount of char, ash, and solid tar produced from the gasification process was measured in order to account for the mass and carbon conversion efficiency. Elemental analysis of the char and solid tar samples was done using ultimate analysis machine, while the relative concentration of the different compounds in the liquid tar was determined making use of a liquid gas chromatography (GC) unit. Average tar concentration of 4.928 g/Nm3 and 1.923 g/Nm3 was obtained for raw gas and cleaned gas samples, respectively. Tar concentration in the raw gas sample was found to be higher compared to results for other biomass materials, which could be attributed to the higher volatile matter percentage of OPF. Average cleaning efficiency of 61% which is comparable to that of sand bed filter and venturi scrubber cleaning systems reported in the literature was obtained for the cleaning system proposed in the current study.
    Matched MeSH terms: Phoeniceae/chemistry*
  2. Fulltext A new hybrid algorithm for intelligent detection of sudden decline syndrome of date palm disease
    Magsi A, Mahar JA, Maitlo A, Ahmad M, Razzaq MA, Bhuiyan MAS, et al.
    Sci Rep, 2023 Sep 16;13(1):15381.
    PMID: 37717081 DOI: 10.1038/s41598-023-41727-9
    Date palm is an important domestic cash crop in most countries. Sudden Decline Syndrome (SDS) causes a huge loss to the crop both in quality and quantity. The literature reports the significance of early detection of disease towards preventive measures to improve the quality of the crop. The number of prevailing detection methods limits to consideration of a certain aspect of disease identification. This study proposes a new hybrid fuzzy fast multi-Otsu K-Means (FFMKO) algorithm integrating the date palm image enhancement, robust thresholding, and optimal clustering for significant disease identification. The algorithm adopts a multi-operator image resizing cost function based on image energy and the dominant color descriptor, the adaptive Fuzzy noise filter, and Otsu image thresholding combined with K-Means clustering enhancements. Besides, we validate the process with histogram equalization and threshold transformation towards enhanced color feature extraction of date palm images. The algorithm authenticates findings on a local dataset of 3293 date palm images and, on a benchmarked data set as well. It achieves an accuracy of 94.175% for successful detection of SDS that outperforms the existing similar algorithms. The impactful findings of this study assure the fast and authentic detection of the disease at an earlier stage to uplift the quality and quantity of the date palm and boost the agriculture-based economy.
    Matched MeSH terms: Phoeniceae*
  3. Functional food and nutra-pharmaceutical perspectives of date (Phoenix dactylifera L.) fruit
    Younas A, Naqvi SA, Khan MR, Shabbir MA, Jatoi MA, Anwar F, et al.
    J Food Biochem, 2020 09;44(9):e13332.
    PMID: 32588917 DOI: 10.1111/jfbc.13332
    Date palm counts among the oldest fruit crops of the world and is mainly cultivated for its highly nutritious fruits consumed as a staple food in many countries, especially in the Gulf region. Dates are enriched with numerous therapeutic bioactives and functional compounds such as phenolics, flavonols, carotenoids, minerals, and vitamins that not only provide an appreciable amount of energy required for the human body but also act as an effective therapeutic agent against several diseases. This review aimed to provide a deep insight into the nutritional as well as phytochemicals profile of date fruit and its seeds in order to explore their biological (anti-cancer, anti-diabetic, cardio-protective, anti-inflammatory properties), functional food, and nutra-pharmaceutical attributes. PRACTICAL APPLICATIONS: This review provides updated information regarding the date fruits and seeds phytochemicals composition together with highlighting dates potential as a natural therapeutic agent against several diseases. The study also urges the importance of consuming dates as a great package to live a healthy life due to the functional food and nutraceutical properties of this valuable fruit. The study also provides information first time as recommending dates to cope with the hidden hunger or micronutrient deficiency faced by the third world inhabitants. Hence, the review may further help the industry and researchers to explore the potential of dates for future medicinal and nutra-pharmaceutical applications.
    Matched MeSH terms: Phoeniceae*
  4. The retrospect and prospect of the applications of biotechnology in Phoenix dactylifera L
    Gantait S, El-Dawayati MM, Panigrahi J, Labrooy C, Verma SK
    Appl Microbiol Biotechnol, 2018 Oct;102(19):8229-8259.
    PMID: 30054703 DOI: 10.1007/s00253-018-9232-x
    Date palm (Phoenix dactylifera L.) is one of the most important fruit trees that contribute a major part to the economy of Middle East and North African countries. It is quintessentially called "tree of life" owing to its resilience to adverse climatic conditions, along with manifold nutritional-cum-medicinal attributes that comes from its fruits and other plant parts. Being a tree with such immense utility, it has gained substantial attention of tree breeders for its genetic advancement via in vitro biotechnological interventions. Herein, an extensive review of biotechnological research advances in date palm has been consolidated as one of the major research achievements during the past two decades. This article compares the different biotechnological techniques used in this species such as: tissue and organ culture, bioreactor-mediated large-scale propagation, cell suspension culture, embryogenic culture, protoplast culture, conservation (for short- and long-term) of germplasms, in vitro mutagenesis, in vitro selection against biotic and abiotic stresses, secondary metabolite production in vitro, and genetic transformation. This review provides an insight on crop improvement and breeding programs for improved yield and quality fruits; besides, it would undeniably facilitate the tissue culture-based research on date palm for accelerated propagation and enhanced production of quality planting materials, along with conservation and exchange of germplasms, and genetic engineering. In addition, the unexplored research methodologies and major bottlenecks identified in this review should be contemplated on in near future.
    Matched MeSH terms: Phoeniceae/genetics*; Phoeniceae/physiology*
  5. Fulltext Enhanced butanol production by Clostridium acetobutylicum NCIMB 13357 grown on date fruit as carbon source in P2 medium
    Khamaiseh EI, Abdul Hamid A, Abdeshahian P, Wan Yusoff WM, Kalil MS
    ScientificWorldJournal, 2014;2014:395754.
    PMID: 24672315 DOI: 10.1155/2014/395754
    The production of biobutanol was studied by the cultivation of Clostridium acetobutylicum NCIMB 13557 in P2 medium including date fruit as the sole substrate. The effect of P2 medium and the effect of different concentrations of date fruit ranging from 10 to 100 g/L on biobutanol production were investigated. Anaerobic batch culture was carried out at 35 °C incubation temperature and pH 7.0 ± 0.2 for 72 h. Experimental results showed that the lowest yield of biobutanol and acetone-butanol-ethanol (ABE) was 0.32 and 0.35 gram per gram of carbohydrate consumed (g/g), respectively, when an initial date fruit concentration of 10 g/L was utilized. At this fruit date concentration a biobutanol production value of 1.56 g/L was obtained. On the other hand, the maximum yield of biobutanol (0.48 g/g) and ABE (0.63 g/g) was produced at 50 g/L date fruit concentration with a biobutanol production value as high as 11 g/L. However, when a higher initial date fruit concentration was used, biobutanol and ABE production decreased to reach the yield of 0.22 g/g and 0.35 g/g, respectively, where 100 g/L date fruit was used. Similar results also revealed that 10.03 g/L biobutanol was produced using 100 g/L date fruit.
    Matched MeSH terms: Phoeniceae/metabolism*
  6. Fulltext Bioactivity and Pharmacological Potential of Date Palm (Phoenix dactylifera L.) Against Pandemic COVID-19: a Comprehensive Review
    Ahmad Mohd Zain MR, Abdul Kari Z, Dawood MAO, Nik Ahmad Ariff NS, Salmuna ZN, Ismail N, et al.
    Appl Biochem Biotechnol, 2022 Oct;194(10):4587-4624.
    PMID: 35579740 DOI: 10.1007/s12010-022-03952-2
    A novel coronavirus disease (COVID-19) or severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2), transmitted from person to person, has quickly emerged as the pandemic responsible for the current global health crisis. This infection has been declared a global pandemic, resulting in a concerning number of deaths as well as complications post-infection, primarily among vulnerable groups particularly older people and those with multiple comorbidities. In this article, we review the most recent research on the role of date palm (Phoenix dactylifera L.) fruits (DPFs) to prevent or treat COVID-19 infection. The mechanisms underlying this preventive or therapeutic effect are also discussed in terms of bioactivity potentials in date palm, e.g., antimicrobial, antioxidant, anticancer, anti-diabetic, anti-inflammatory, neuroprotective, and hemolytic potential, as well as prospect against COVID-19 disease and the potential product development. Therefore, it can be concluded that regular consumption of DPFs may be associated with a lower risk of some chronic diseases. Indeed, DPFs have been widely used in folk medicine since ancient times to treat a variety of health conditions, demonstrating the importance of DPFs as a nutraceutical and source of functional nourishment. This comprehensive review aims to summarize the majority of the research on DPFs in terms of nutrient content and biologically active components such as phenolic compounds, with an emphasis on their roles in improving overall health as well as the potential product development to ensure consumers' satisfaction in a current pandemic situation. In conclusion, DPFs can be given to COVID-19 patients as a safe and effective add-on medication or supplement in addition to routine treatments.
    Matched MeSH terms: Phoeniceae*
  7. Green synthesis of zinc oxide nanoparticles using Phoenix dactylifera waste as bioreductant for effective dye degradation and antibacterial performance in wastewater treatment
    Rambabu K, Bharath G, Banat F, Show PL
    J Hazard Mater, 2021 01 15;402:123560.
    PMID: 32759001 DOI: 10.1016/j.jhazmat.2020.123560
    Production of multi-functional zinc oxide nanoparticles (ZnO-NPs) for wastewater treatment through green-approaches is a desirable alternative for conventional synthesis routes. Biomass waste valorization for nanoparticles synthesis has received increased research attention. The present study reports date pulp waste (DPW) utilization as an effective bio-reductant for green-synthesis of ZnO-NPs. A simple and eco-friendly process with low reaction time and calcination temperature was adopted for DPW mediated ZnO-NPs (DP-ZnO-NPs) synthesis. Microscopic investigations of DP-ZnO-NPs confirmed the non-agglomeration and spherical nature of particles with mean diameter of 30 nm. EDX and XPS analysis defined the chemical composition and product purity of DP-ZnO-NPs. UV and photoluminescence studies exhibited surface plasmonic resonance at 381 nm and fluorescent nature of DP-ZnO-NPs. FTIR studies established a formation mechanism outline for DP-ZnO-NPs. XRD and Raman investigations confirmed the crystalline and hexagonal wurtzite phase of DP-ZnO-NPs. DSC/TG analysis displayed the thermal stability of DP-ZnO-NPs with <10 wt% loss upto 700 °C. Photocatalytic degradation of hazardous methylene blue and eosin yellow dyes using DP-ZnO-NPs, showed rapid decomposition rate with 90 % degradation efficiency. Additionally, DP-ZnO-NPs demonstrated significant antibacterial effects on various pathogenic bacteria in terms of zone-of-inhibition measured by disc-diffusion method. Thus, the as-prepared DP-ZnO-NPs is suitable for industrial wastewater treatment.
    Matched MeSH terms: Phoeniceae*
  8. Study of Primordial 226Ra, 228Ra, and 40K Concentrations in Dietary Palm Dates and Concomitant Radiological Risk
    Khandaker MU, Shuaibu HK, Alklabi FAA, Alzimami KS, Bradley DA
    Health Phys, 2019 06;116(6):789-798.
    PMID: 30889102 DOI: 10.1097/HP.0000000000001042
    The presence of natural radionuclides in the food chain point to a need to assess concentration levels and concomitant radiological risk. Highly popular and forming a staple part of the diet in North Africa, the Arabian Peninsula, and West Asia, palm dates growing naturally there have even greater marketability than simple satisfaction of domestic demand, the palm dates representing a valuable export item. Accurate knowledge of the levels of natural radioactivity in the fruit is thus of importance. In this study, using high-purity germanium gamma-ray spectrometry, quantification has been made of natural radionuclide concentrations in imported dates originating from Iran, Saudi Arabia, and Tunisia. Sample analyses reveal respective mean activity concentrations of 1.4 ± 0.3, 0.8 ± 0.4, and 186 ± 9 Bq kg dry weight for Ra, Ra, and K. For each nuclide, the mean concentration varies little between the dates of the three represented regions. The estimated committed effective dose resulting from the consumption of date fruits for a typical adult was found to be 29.9 μSv y, well below the global internal dose of 290 μSv y assessed by the United Nations Scientific Committee on the Effects of Atomic Radiation to be due to food and water intake. Similarly, the excess lifetime cancer risk due to naturally occurring radioactive material exposure via date fruit consumption is seen to be below the International Commission on Radiological Protection cancer risk factor of 2.5 × 10 based on the additional annual dose limit of 1 mSv for a member of the general public. The results show no significant uptake in the analyzed date fruits.
    Matched MeSH terms: Phoeniceae/chemistry*
  9. Biosorption performance of date palm empty fruit bunch wastes for toxic hexavalent chromium removal
    Rambabu K, Bharath G, Banat F, Show PL
    Environ Res, 2020 08;187:109694.
    PMID: 32485359 DOI: 10.1016/j.envres.2020.109694
    Biosorption ability of date palm empty fruit bunch (DPEFB) was examined for the removal of toxic hexavalent chromium (Cr6+) ions from synthetic wastewater. The pretreated DPEFB biosorbent was studied for its morphology and surface chemistry through Scanning electron microscopy, Energy dispersive elemental analysis and Fourier transform infrared spectroscopy. Effect of biosorption parameters such as pH, biosorbent dosage, contact time, temperature, initial feed concentration and agitation speed on the Cr6+ ions removal efficiency by DPEFB was critically evaluated. The isoelectric point for the DPEFB sorbent was observed at pH 2, above which it was dehydronated to capture the positively charged Cr6+ ions. Batch biosorption studies showed that an optimal chromium removal efficiency of 58.02% was recorded by the DPEFB biosorbent for pH 2, dosage 0.3 g, 100 rpm agitation speed, 120 min contact time, 50 mg/L initial feed concentration and 30 °C operational temperature. Thermodynamic analysis showed that the binding of Cr6+ ions on DPEFB surface was exothermic, stable and favorable at room temperature. Equilibrium behavior of chromium binding on DPEFB was more aligned to Temkin isotherm (R2 = 0.9852) highlighting the indirect interactions between Cr6+ ions and the biosorbent. Kinetic modeling revealed that the biosorption of Cr6+ ions by DPEFB obeyed pseudo-second order model than the pseudo-first order and intra-particle diffusion models. Reusability studies of the DPEFB sorbent showed that NaNO3 was an effective regenerant and the biosorbent can be efficiently reused up to three successive biosorption-desorption cycles for chromium removal. In summary, the results clearly showed that the DPEFB biowaste seems to be an efficient, economic and eco-friendly biosorbent for sustainable removal of toxic hexavalent chromium ions from domestic and industrial wastewater streams.
    Matched MeSH terms: Phoeniceae*
  10. Fulltext Codon usage and codon pair patterns in non-grass monocot genomes
    Mazumdar P, Binti Othman R, Mebus K, Ramakrishnan N, Ann Harikrishna J
    Ann Bot, 2017 Nov 28;120(6):893-909.
    PMID: 29155926 DOI: 10.1093/aob/mcx112
    Background and Aims: Studies on codon usage in monocots have focused on grasses, and observed patterns of this taxon were generalized to all monocot species. Here, non-grass monocot species were analysed to investigate the differences between grass and non-grass monocots.

    Methods: First, studies of codon usage in monocots were reviewed. The current information was then extended regarding codon usage, as well as codon-pair context bias, using four completely sequenced non-grass monocot genomes (Musa acuminata, Musa balbisiana, Phoenix dactylifera and Spirodela polyrhiza) for which comparable transcriptome datasets are available. Measurements were taken regarding relative synonymous codon usage, effective number of codons, derived optimal codon and GC content and then the relationships investigated to infer the underlying evolutionary forces.

    Key Results: The research identified optimal codons, rare codons and preferred codon-pair context in the non-grass monocot species studied. In contrast to the bimodal distribution of GC3 (GC content in third codon position) in grasses, non-grass monocots showed a unimodal distribution. Disproportionate use of G and C (and of A and T) in two- and four-codon amino acids detected in the analysis rules out the mutational bias hypothesis as an explanation of genomic variation in GC content. There was found to be a positive relationship between CAI (codon adaptation index; predicts the level of expression of a gene) and GC3. In addition, a strong correlation was observed between coding and genomic GC content and negative correlation of GC3 with gene length, indicating a strong impact of GC-biased gene conversion (gBGC) in shaping codon usage and nucleotide composition in non-grass monocots.

    Conclusion: Optimal codons in these non-grass monocots show a preference for G/C in the third codon position. These results support the concept that codon usage and nucleotide composition in non-grass monocots are mainly driven by gBGC.

    Matched MeSH terms: Phoeniceae/genetics
  11. Fulltext Effect of the Roasting Conditions on the Physicochemical, Quality and Sensory Attributes of Coffee-Like Powder and Brew from Defatted Palm Date Seeds
    Fikry M, Yusof YA, Al-Awaadh AM, Rahman RA, Chin NL, Mousa E, et al.
    Foods, 2019 Feb 06;8(2).
    PMID: 30736332 DOI: 10.3390/foods8020061
    Developing a bioactive brew is a novel track for revalorization of palm date byproducts. The effect of roasting temperature (160, 180 and 200 °C ) and roasting time (10, 20 and 30 min) on the hardness of the roasted date seeds, moisture content of the defatted roasted date seed powder (DRDSP), bulk density of the DRDSP, color parameters of DRDSP, quality attributes (extraction yield, pH and browning index), the chemical properties (antioxidants and total phenolic content) and the sensory attributes (color, aroma, taste and overall preference) of the brew prepared from DRDSP was studied. The physicochemical, quality, and sensory attributes were found to be significantly influenced by the roasting temperature and time. Additionally, the models proposed could satisfactorily describe the changes in the different properties during the roasting process. The optimum conditions of the roasting process obtained using the superimposed contour plot were 199.9 °C and 21.5 min. In the longer term, the results of this study would be beneficial for the manufacturers of the date seeds powder and brew.
    Matched MeSH terms: Phoeniceae
  12. Fulltext Impact of a katabatic wind event on GPS PWV measurements at Scott Base Station, Antarctica
    Suparta, W., Samah, A.A., Harper, A.R.
    ASM Science Journal, 2009;3(2):152-160.
    MyJurnal
    Katabatic winds dramatically affect the polar climate. Their activity depends on density of air and temperature in the source region. This paper presents for first time an analysis of the precipitable water vapour (PWV) variability and its relation to a katabatic event at Scott Base station, Antarctica. A significant effect in their characteristics toward calculation of a reliable user accuracy in GPS applications is addressed. Our investigations using the data between 21st and 30th of November 2002 showed that the PWV profile exhibited an irregular pattern with a maximum value of 7.38 mm (~ 6 mm on average), and was more strongly influenced by relative humidity than by wind speed activity. The dominant wind flow during this period was from the North-Northeast (blowing from the Ross Sea) with a median speed of 4.96 ms–1. The PWV was high when the temperature was between –15ºC and –11ºC. During the dates identified as a katabatic event between 21:30 UT of 28th November and 18:40 UT on 29th November, the wind blew from the Southeast-South direction (from the Ross Ice Shelf) with a maximum speed of 10.92 ms–1. The PWV increased ~1.4 mm (23%) from the mean value, indicating severe wind during this event which had pronounced effect on GPS observations.
    Matched MeSH terms: Phoeniceae
  13. Fulltext Dual resonant frequencies effects on an induction-based oil palm fruit sensor
    Harun NH, Misron N, Mohd Sidek R, Aris I, Wakiwaka H, Tashiro K
    Sensors (Basel), 2014;14(11):21923-40.
    PMID: 25414970 DOI: 10.3390/s141121923
    As the main exporter in the oil palm industry, the need to improve the quality of palm oil has become the main interest among all the palm oil millers in Malaysia. To produce good quality palm oil, it is important for the miller to harvest a good oil palm Fresh Fruit Bunch (FFB). Conventionally, the main reference used by Malaysian harvesters is the manual grading standard published by the Malaysian Palm Oil Board (MPOB). A good oil palm FFB consists of all matured fruitlets, aged between 18 to 21 weeks of antheses (WAA). To expedite the harvesting process, it is crucial to implement an automated detection system for determining the maturity of the oil palm FFB. Various automated detection methods have been proposed by researchers in the field to replace the conventional method. In our preliminary study, a novel oil palm fruit sensor to detect the maturity of oil palm fruit bunch was proposed. The design of the proposed air coil sensor based on the inductive sensor was further investigated mainly in the context of the effect of coil diameter to improve its sensitivity. In this paper, the sensitivity of the inductive sensor was further examined with a dual flat-type shape of air coil. The dual air coils were tested on fifteen samples of fruitlet from two categories, namely ripe and unripe. Samples were tested within 20 Hz to 10 MHz while evaluations on both peaks were done separately before the gap between peaks was analyzed. A comparative analysis was conducted to investigate the improvement in sensitivity of the induction-based oil palm fruit sensor as compared to previous works. Results from the comparative study proved that the inductive sensor using a dual flat-type shape air coil has improved by up to 167%. This provides an indication in the improvement in the coil sensitivity of the palm oil fruit sensor based on the induction concept.
    Matched MeSH terms: Phoeniceae/classification*; Phoeniceae/chemistry*
  14. Catalyst free silica templated porous carbon nanoparticles from bio-waste materials
    Kumar A, Hegde G, Manaf SA, Ngaini Z, Sharma KV
    Chem Commun (Camb), 2014 Oct 28;50(84):12702-5.
    PMID: 25100105 DOI: 10.1039/c4cc04378b
    Porous Carbon Nanoparticles (PCNs) with well-developed microporosity were obtained from bio-waste oil palm leaves (OPL) using single step pyrolysis in nitrogen atmosphere at 500-600 °C in tube-furnace without any catalysis support. The key approach was using silica (SiO2) bodies of OPL as a template in the synthesis of microporous carbon nanoparticles with very small particle sizes of 35-85 nm and pore sizes between 1.9-2 nm.
    Matched MeSH terms: Phoeniceae/metabolism; Phoeniceae/chemistry
  15. Chemical Composition of Date Palm (Phoenix dactylifera L.) Seed Oil from Six Saudi Arabian Cultivars
    Nehdi IA, Sbihi HM, Tan CP, Rashid U, Al-Resayes SI
    J Food Sci, 2018 Mar;83(3):624-630.
    PMID: 29377104 DOI: 10.1111/1750-3841.14033
    This investigation aimed to evaluate the chemical composition and physicochemical properties of seed oils from 6 date palm (Phoenix. dactylifera L.) cultivars (Barhi, Khalas, Manifi, Rezeiz, Sulaj, and Sukkari) growing in Saudi Arabia and to compare them with conventional palm olein. The mean oil content of the seeds was about 7%. Oleic acid (48.67%) was the main fatty acid, followed by lauric acid (17.26%), stearic acid (10.74%), palmitic acid (9.88%), and linolenic acid (8.13%). The mean value for free fatty acids content was 0.5%. The P. dactylifera seed oil also exhibited a mean tocol content of 70.75 mg/100 g. α-Tocotrienol was the most abundant isomer (30.19%), followed by γ-tocopherol (23.61%), γ-tocotrienol (19.07%), and α-tocopherol (17.52%). The oils showed high thermal and oxidative stabilities. The findings indicate that date seed oil has the potential to be used in the food industry as an abundant alternative to palm olein.

    PRACTICAL APPLICATION: This study showed that date seed had great nutritional value due to which it can be used for food applications especially as frying or cooking oil. In addition, date oil has also potential to be used in cosmetic and pharmaceutical practices as well. The extraction of oil from Phoenix dactylifera seed on large scale can create positive socioeconomic benefits especially for rural communities and could also assist to resolve the environmental issues generated by excess date production in large scale date-producing countries such as Saudi Arabia.

    Matched MeSH terms: Phoeniceae/classification; Phoeniceae/chemistry*
  16. Species composition and distribution data of benthic foraminifera from the straits of malacca during the early holocene
    Minhat FI, Husain ML, Sulaiman A
    Data Brief, 2019 Aug;25:104214.
    PMID: 31372481 DOI: 10.1016/j.dib.2019.104214
    The data presented herein were collected from the Straits of Malacca, along the west coast of Peninsular Malaysia. A 3.9 m core sample was retrieved from the Straits of Malacca in 2001. This core was continuously sub-sampled at 5-cm intervals between selected core depths of 220 cm and 380 cm. The 32 sub-samples obtained were analysed to understand the species composition of benthic Foraminifera in them and the changes in lithology during the Holocene. The data available in this article include the raw counts of different species of Foraminifera and the weight percentages of sediment of different grain sizes and organic matter at different depth. In addition, the estimated ages of the sediment samples are also provided. The chronostratigraphic framework of the core was based on radiocarbon-14 Accelerator Mass Spectrometry (AMS) dates estimated from three selected sediment intervals. The results of carbon dating were calibrated to calendar years (cal BC/AD) and calibrated radiocarbon years (cal BP). Calibration was done using the INTCAL program with a Delta R value of -19 ± 70.
    Matched MeSH terms: Phoeniceae
  17. Fulltext In Silico Approach for Characterization and Comparison of Repeats in the Genomes of Oil and Date Palms
    Filho JAF, de Brito LS, Leão AP, Alves AA, Formighieri EF, Júnior MTS
    Bioinform Biol Insights, 2017;11:1177932217702388.
    PMID: 28469420 DOI: 10.1177/1177932217702388
    Transposable elements (TEs) are mobile genetic elements present in almost all eukaryotic genomes. Due to their typical patterns of repetition, discovery, and characterization, they demand analysis by various bioinformatics software. Probably, as a result of the need for a complex analysis, many genomes publicly available do not have these elements annotated yet. In this study, a de novo and homology-based identification of TEs and microsatellites was performed using genomic data from 3 palm species: Elaeis oleifera (American oil palm, v.1, Embrapa, unpublished; v.8, Malaysian Palm Oil Board [MPOB], public), Elaeis guineensis (African oil palm, v.5, MPOB, public), and Phoenix dactylifera (date palm). The estimated total coverage of TEs was 50.96% (523 572 kb) and 42.31% (593 463 kb), 39.41% (605 015 kb), and 33.67% (187 361 kb), respectively. A total of 155 726 microsatellite loci were identified in the genomes of oil and date palms. This is the first detailed description of repeats in the genomes of oil and date palms. A relatively high diversity and abundance of TEs were found in the genomes, opening a range of further opportunities for applied research in these genera. The development of molecular markers (mainly simple sequence repeat), which may be immediately applied in breeding programs of those species to support the selection of superior genotypes and to enhance knowledge of the genetic structure of the breeding and natural populations, is the most notable opportunity.
    Matched MeSH terms: Phoeniceae
  18. Fecundity, fertility and survival of red palm weevil (Rhynchophorus ferrugineus) larvae reared on sago palm
    Wahizatul Afzan Azmi, Yong Kah Wai, Aisyah Abu Bakar
    Sains Malaysiana, 2015;44:1371-1375.
    AISYAH ABU BAKARRed palm weevil (RPW), Rhynchophorus ferrugineus has been reported as a serious pest of coconut, sago palm and date palm in many parts of the world. In Malaysia, RPW is a lethal pest of coconut in Terengganu and sago palm in Sarawak. However, very limited information about the reproductive performance of RPW is available, specifically in Malaysia. In the present study, the reproductive performance of RPW reared on sago palm (Metroxylon sagu) were studied using nine pairs of virgin RPW under laboratory conditions. The number of eggs laid and eggs viability were recorded daily until females could not produce eggs. The total number of eggs laid were 3081 and the average number of eggs deposited by a female was 342.3+0.97 eggs (ranged from 270 to 396). The percentage of hatchability was 52.4% and out of the total 1614 hatched eggs, only 118 individuals (7.3%) were survived until late instar. However, no significant differences in fecundity, hatchability and total survived larvae in different RPW pairs were observed. Females longevity was found to be strongly influenced by the number of eggs laid; the higher number of eggs laid, the shorter is the life span of the female. This study is important to understand the biological aspects of RPW, as a first step to develop effective control strategy of the pest.
    Matched MeSH terms: Phoeniceae
  19. 1H-NMR-based metabolomics to investigate the effects of Phoenix dactylifera seed extracts in LPS-IFN-γ-induced RAW 264.7 cells
    Abdul-Hamid NA, Abas F, Ismail IS, Tham CL, Maulidiani M, Mediani A, et al.
    Food Res Int, 2019 11;125:108565.
    PMID: 31554083 DOI: 10.1016/j.foodres.2019.108565
    Inflammation has been revealed to play a central role in the onset and progression of many illnesses. Nuclear magnetic resonance (NMR) based metabolomics method was adopted to evaluate the effects of Phoenix dactylifera seeds, in particular the Algerian date variety of Deglet on the metabolome of the LPS-IFN-γ-induced RAW 264.7 cells. Variations in the extracellular and intracellular profiles emphasized the differences in the presence of tyrosine, phenylalanine, alanine, proline, asparagine, isocitrate, inosine and lysine. Principal component analysis (PCA) revealed noticeable clustering patterns between the treated and induced RAW cells based on the metabolic profile of the extracellular metabolites. However, the effects of treatment on the intracellular metabolites appears to be less distinct as suggested by the PCA and heatmap analyses. A clear group segregation was observed for the intracellular metabolites from the treated and induced cells based on the orthogonal partial least squares-discriminant analysis (OPLS-DA) score plot. Likewise, 11 of the metabolites in the treated cells were significantly different from those in the induced groups, including amino acids and succinate. The enrichment analysis demonstrated that treatment with Deglet seed extracts interfered with the energy and of amino acids metabolism. Overall, the obtained data reinforced the possible application of Deglet seeds as a functional food with anti-inflammatory properties.
    Matched MeSH terms: Phoeniceae*
  20. Fulltext Greenhouse gas emissions resulting from conversion of peat swamp forest to oil palm plantation
    Cooper HV, Evers S, Aplin P, Crout N, Dahalan MPB, Sjogersten S
    Nat Commun, 2020 01 21;11(1):407.
    PMID: 31964892 DOI: 10.1038/s41467-020-14298-w
    Conversion of tropical peat swamp forest to drainage-based agriculture alters greenhouse gas (GHG) production, but the magnitude of these changes remains highly uncertain. Current emissions factors for oil palm grown on drained peat do not account for temporal variation over the plantation cycle and only consider CO2 emissions. Here, we present direct measurements of GHGs emitted during the conversion from peat swamp forest to oil palm plantation, accounting for CH4 and N2O as well as CO2. Our results demonstrate that emissions factors for converted peat swamp forest is in the range 70-117 t CO2 eq ha-1 yr-1 (95% confidence interval, CI), with CO2 and N2O responsible for ca. 60 and ca. 40% of this value, respectively. These GHG emissions suggest that conversion of Southeast Asian peat swamp forest is contributing between 16.6 and 27.9% (95% CI) of combined total national GHG emissions from Malaysia and Indonesia or 0.44 and 0.74% (95% CI) of annual global emissions.
    Matched MeSH terms: Phoeniceae/metabolism*
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