Displaying publications 1 - 20 of 119 in total

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  1. Okhunov A, Hasan Abu Kassim, Usmanov P
    In this paper, a method of defining the even-even deformed nuclei inertial parameters is suggested. Calculations for isotopes 162-168Hf and 164-176Yb are listed. The parameters of inertia of rotational nuclei are also defined. Dependence of the parameters of inertia on the nucleons number is shown.
    Matched MeSH terms: Cell Nucleus
  2. Abbas N, Mohamad D, Abdullah AH, Saba T, Al-Rodhaan M, Al-Dhelaan A
    Pak J Pharm Sci, 2015 Sep;28(5):1801-6.
    PMID: 26408877
    The Leukocytes are differentiated from each other on the basis of their nuclei, demanded in many Medical studies, especially in all types of Leukemia by the Hematologists to note the disorder caused by specific type of Leukocyte. Leukemia is a life threatening disease. The work for diagnosing is manually carried out by the Hematologists involving much labor, time and human errors. The problems mentioned are easily addressed through computer vision techniques, but still accuracy and efficiency are demanded in terms of the basic and challenging step segmentation of Leukocyte's nuclei. The underlying study proposed better method in terms of accuracy and efficiency by designing a dynamic convolution filter for boosting low intensity values in the separated green channel of an RGB image and suppressing the high values in the same channel. The high values in the green channel become 255 (background) while the nuclei always have low values in the green channel and thus clearly appear as foreground. The proposed technique is tested on 365 images achieving an overall accuracy of 95.89%, while improving the efficiency by 10%. The proposed technique achieved its targets in a realistic way by improving the accuracy as well as the efficiency and both are highly required in the area.
    Matched MeSH terms: Cell Nucleus/ultrastructure*
  3. Khan, Sohail. A., Mat Jafri, M.Z., Jaafar, M.S., Low, K.L.
    MyJurnal
    A modified potential of the sudden approximation, modified to include interactions among nuclei of different radii, is applied to explain the mass asymmetry of fission fragments in the thermal fission of Uranium-235. The results are encouraging in that the asymmetry feature in the fission yield is displayed. It appears that the mass asymmetry is a feature that can be explained without incorporating other effects. However, close correspondence requires addition of extra features.
    Matched MeSH terms: Cell Nucleus
  4. Noora Rosli, Okhunov, A.A., Hasan Abu Kassim
    MyJurnal
    160-162 Dy
    nuclei are the best candidates to study collective properties of low-lying states since these
    nuclei are quite well studied experimentally. Phenomenological model is used to evaluate the positive-parity states energy spectra and the structure of these nuclei by taking into account the Coriolis mixing between states. Deviations from the adiabatic conditions are found to be occurred.
    Matched MeSH terms: Cell Nucleus
  5. Sen Gupta BN
    Med J Malaya, 1968 Sep;23(1):32-4.
    PMID: 4237553
    Matched MeSH terms: Cell Nucleus*
  6. Santhosh K, Manzoor S, Sushanth A, Seralathan S, Rajasekar V, Jacob A
    J Contemp Dent Pract, 2020 Nov 01;21(11):1258-1261.
    PMID: 33850072
    AIM AND OBJECTIVE: To evaluate the possible genotoxic effect of X-rays on buccal mucosa while exposing to dental panoramic radiography using micronucleus test.

    MATERIALS AND METHODS: The study group comprised of 30 healthy subjects, 15 males and 15 females, aged between 24 years and 65 years. Samples were obtained from the exfoliated oral mucosa cells of buccal mucosa before and 12 days after exposing the patients to panoramic radiography.

    RESULTS: The study reported that there was no significant increase in the number of micronuclei cells present before and after panoramic radiography. Positive correlation existed between age with pre- and postexposure micronuclei.

    CONCLUSION: Diagnostic dental panoramic radiograph does not induce micronuclei in the target buccal epithelium cells. A positive correlation between age and micronuclei frequency was established.

    CLINICAL SIGNIFICANCE: Panoramic radiographs does not induce cytotoxicity but increase frequency may be vulnerable to genotoxic effects in buccal mucosal cells. Hence, dental radiographs should be prescribed only when necessary.

    Matched MeSH terms: Cell Nucleus*
  7. Shrivastava G, Bakshi HA, Aljabali AA, Mishra V, Hakkim FL, Charbe NB, et al.
    Curr Drug Deliv, 2020;17(2):101-111.
    PMID: 31906837 DOI: 10.2174/1567201817666200106104332
    BACKGROUND: Nucleus targeted drug delivery provides several opportunities for the treatment of fatal diseases such as cancer. However, the complex nucleocytoplasmic barriers pose significant challenges for delivering a drug directly and efficiently into the nucleus. Aptamers representing singlestranded DNA and RNA qualify as next-generation highly advanced and personalized medicinal agents that successfully inhibit the expression of certain proteins; possess extraordinary gene-expression for manoeuvring the diseased cell's fate with negligible toxicity. In addition, the precisely directed aptamers to the site of action present a tremendous potential to reach the nucleus by escaping the ensuing barriers to exhibit a better drug activity and gene expression.

    OBJECTIVE: This review epigrammatically highlights the significance of targeted drug delivery and presents a comprehensive description of the principal barriers faced by the nucleus targeted drug delivery paradigm and ensuing complexities thereof. Eventually, the progress of nucleus targeting with nucleic acid aptamers and success achieved so far have also been reviewed.

    METHODS: Systematic literature search was conducted of research published to date in the field of nucleic acid aptamers.

    CONCLUSION: The review specifically points out the contribution of individual aptamers as the nucleustargeting agent rather than aptamers in conjugated form.

    Matched MeSH terms: Cell Nucleus/metabolism*
  8. Sohail A, Khan A, Nisar H, Tabassum S, Zameer A
    Med Image Anal, 2021 08;72:102121.
    PMID: 34139665 DOI: 10.1016/j.media.2021.102121
    Mitotic nuclei estimation in breast tumour samples has a prognostic significance in analysing tumour aggressiveness and grading system. The automated assessment of mitotic nuclei is challenging because of their high similarity with non-mitotic nuclei and heteromorphic appearance. In this work, we have proposed a new Deep Convolutional Neural Network (CNN) based Heterogeneous Ensemble technique "DHE-Mit-Classifier" for analysis of mitotic nuclei in breast histopathology images. The proposed technique in the first step detects candidate mitotic patches from the histopathological biopsy regions, whereas, in the second step, these patches are classified into mitotic and non-mitotic nuclei using the proposed DHE-Mit-Classifier. For the development of a heterogeneous ensemble, five different deep CNNs are designed and used as base-classifiers. These deep CNNs have varying architectural designs to capture the structural, textural, and morphological properties of the mitotic nuclei. The developed base-classifiers exploit different ideas, including (i) region homogeneity and feature invariance, (ii) asymmetric split-transform-merge, (iii) dilated convolution based multi-scale transformation, (iv) spatial and channel attention, and (v) residual learning. Multi-layer-perceptron is used as a meta-classifier to develop a robust and accurate classifier for providing the final decision. The performance of the proposed ensemble "DHE-Mit-Classifier" is evaluated against state-of-the-art CNNs. The performance evaluation on the test set suggests the superiority of the proposed ensemble with an F-score (0.77), recall (0.71), precision (0.83), and area under the precision-recall curve (0.80). The good generalisation of the proposed ensemble with a considerably high F-score and precision suggests its potential use in the development of an assistance tool for pathologists.
    Matched MeSH terms: Cell Nucleus
  9. Redzuwan Yahaya, Shahidan Radiman, Saad M. Saleh
    MyJurnal
    The preformation factor of alpha-decay process in compound nuclei is microscopically proposed with a new perspective. The formation of alpha particle inside the parent nuclei is considered as a quantum-mechanical state which is yielded from a certain interaction among the valance nucleons. This interaction is very similar to that one responsible for the formation of the quasi-bound states in many-body system. This introduced microscopic perspective might give more insight to the understanding of the nuclear structure in the compound nuclei.
    Matched MeSH terms: Cell Nucleus
  10. Krug PJ, Caplins SA, Algoso K, Thomas K, Valdés ÁA, Wade R, et al.
    Proc Biol Sci, 2022 Apr 13;289(1972):20211855.
    PMID: 35382597 DOI: 10.1098/rspb.2021.1855
    Transitions to terrestriality have been associated with major animal radiations including land snails and slugs in Stylommatophora (>20 000 described species), the most successful lineage of 'pulmonates' (a non-monophyletic assemblage of air-breathing gastropods). However, phylogenomic studies have failed to robustly resolve relationships among traditional pulmonates and affiliated marine lineages that comprise clade Panpulmonata (Mollusca, Gastropoda), especially two key taxa: Sacoglossa, a group including photosynthetic sea slugs, and Siphonarioidea, intertidal limpet-like snails with a non-contractile pneumostome (narrow opening to a vascularized pallial cavity). To clarify the evolutionary history of the panpulmonate radiation, we performed phylogenomic analyses on datasets of up to 1160 nuclear protein-coding genes for 110 gastropods, including 40 new transcriptomes for Sacoglossa and Siphonarioidea. All 18 analyses recovered Sacoglossa as the sister group to a clade we named Pneumopulmonata, within which Siphonarioidea was sister to the remaining lineages in most analyses. Comparative modelling indicated shifts to marginal habitat (estuarine, mangrove and intertidal zones) preceded and accelerated the evolution of a pneumostome, present in the pneumopulmonate ancestor along with a one-sided plicate gill. These findings highlight key intermediate stages in the evolution of air-breathing snails, supporting the hypothesis that adaptation to marginal zones played an important role in major sea-to-land transitions.
    Matched MeSH terms: Cell Nucleus
  11. Rahmat RA, Humphries MA, Saedon NA, Self PG, Linacre AMT
    Int J Legal Med, 2023 Sep;137(5):1353-1360.
    PMID: 37306739 DOI: 10.1007/s00414-023-03017-x
    Teeth are frequently used for human identification from burnt remains, as the structure of a tooth is resilient against heat exposure. The intricate composition of hydroxyapatite (HA) mineral and collagen in teeth favours DNA preservation compared to soft tissues. Regardless of the durability, the integrity of the DNA structure in teeth can still be disrupted when exposed to heat. Poor DNA quality can negatively affect the success of DNA analysis towards human identification. The process of isolating DNA from biological samples is arduous and costly. Thus, an informative pre-screening method that could aid in selecting samples that can potentially yield amplifiable DNA would be of excellent value. A multiple linear regression model to predict the DNA content in incinerated pig teeth was developed based on the colourimetry, HA crystallite size and quantified nuclear and mitochondrial DNA. The chromaticity a* was found to be a significant predictor of the regression model. This study outlines a method to predict the viability of extracting nuclear and mitochondrial DNA from pig teeth that were exposed to a wide range of temperatures (27 to 1000 °C) with high accuracy (99.5-99.7%).
    Matched MeSH terms: Cell Nucleus
  12. Vijayarathna S, Oon CE, Jothy SL, Chen Y, Kanwar JR, Sasidharan S
    Curr Gene Ther, 2014;14(2):112-20.
    PMID: 24588707
    For years researchers have exerted every effort to improve the influential roles of microRNA (miRNA) in regulating genes that direct mammalian cell development and function. In spite of numerous advancements, many facets of miRNA generation remain unresolved due to the perplexing regulatory networks. The biogenesis of miRNA, eminently endures as a mystery as no universal pathway defines or explicates the variegation in the rise of miRNAs. Early evidence in biogenesis ignited specific steps of being omitted or replaced that eventuate in the individual miRNAs of different mechanisms. Understanding the basic foundation concerning how miRNAs are generated and function will help with diagnostic tools and therapeutic strategies. This review encompasses the canonical and the non-canonical pathways involved in miRNA biogenesis, while elucidating how miRNAs regulate genes at the nuclear level and also the mechanism that lies behind circulating miRNAs.
    Matched MeSH terms: Cell Nucleus/genetics
  13. Siar CH, Ng KH, Jalil NA
    Oral Surg. Oral Med. Oral Pathol., 1991 Jul;72(1):82-5.
    PMID: 1891247
    Plexiform granular cell odontogenic tumor of the mandible has recently been described. The cardinal histopathologic feature, as its name suggests, is a monophasic plexiform pattern of granular cells; the principal tumor in the differential diagnosis is granular cell ameloblastoma. Unlike the two previously reported cases of plexiform granular cell odontogenic tumor, which occurred as solid tumors in elderly men, the lesion reported here is a unicystic variant occurring in a middle-aged woman.
    Matched MeSH terms: Cell Nucleus/ultrastructure
  14. Moura AE, Shreves K, Pilot M, Andrews KR, Moore DM, Kishida T, et al.
    Mol Phylogenet Evol, 2020 05;146:106756.
    PMID: 32028032 DOI: 10.1016/j.ympev.2020.106756
    Phylogeographic inference has provided extensive insight into the relative roles of geographical isolation and ecological processes during evolutionary radiations. However, the importance of cross-lineage admixture in facilitating adaptive radiations is increasingly being recognised, and suggested as a main cause of phylogenetic uncertainty. In this study, we used a double digest RADseq protocol to provide a high resolution (~4 Million bp) nuclear phylogeny of the Delphininae. Phylogenetic resolution of this group has been especially intractable, likely because it has experienced a recent species radiation. We carried out cross-lineage reticulation analyses, and tested for several sources of potential bias in determining phylogenies from genome sampling data. We assessed the divergence time and historical demography of T. truncatus and T. aduncus by sequencing the T. aduncus genome and comparing it with the T. truncatus reference genome. Our results suggest monophyly for the genus Tursiops, with the recently proposed T. australis species falling within the T. aduncus lineage. We also show the presence of extensive cross-lineage gene flow between pelagic and European coastal ecotypes of T. truncatus, as well as in the early stages of diversification between spotted (Stenella frontalis; Stenella attenuata), spinner (Stenella longirostris), striped (Stenella coeruleoalba), common (Delphinus delphis), and Fraser's (Lagenodelphis hosei) dolphins. Our study suggests that cross-lineage gene flow in this group has been more extensive and complex than previously thought. In the context of biogeography and local habitat dependence, these results improve our understanding of the evolutionary processes determining the history of this lineage.
    Matched MeSH terms: Cell Nucleus/genetics
  15. Santhana Raj L, Teh Hamidah Z, Nor Asiha CP, Paramasvaran S
    Trop Biomed, 2006 Jun;23(1):69-74.
    PMID: 17041554 MyJurnal
    Transmission electron microscopy (TEM) can provide high resolution imaging of biological specimens. The study is to establish the effects of a modified glutaraldehyde (GA) compare to the standard GA fixation on Acanthamoeba castellanii from TEM perspectives and thus provide precise and accurate information on the ultrastructure studies of the parasite. By increasing the contrast, the ultrastructures of the parasite were more evident. The TEM images were obtained from parasites fixed with the modified GA and the standard GA and then the area of the nucleus and the gray values of the image of the nucleus of the parasites were measured. The mean areas of the nucleus were found to be significantly reduced in the standard GA fixed parasites (12210.4 nm2) compared to the modified GA fixed parasites (8676.3 nm2) (p < 0.05). The mean gray values of the image were significantly reduced from 2024 in the standard GA fixed parasites (2024) to the modified GA fixed parasites (1636) (p < 0.05). The study shows that the modified GA produced significantly better contrast on TEM images of the A. castellanii compared to the standard GA. This was because the modified GA generated more free water molecules during fixation and the uptake of modified GA by the nucleus of the parasite organizing all protein constituents in the cell into a more closely packed configuration than that of the standard GA. With such properties, the modified GA is a better fixative providing better images for ultrastructures of the parasite.
    Matched MeSH terms: Cell Nucleus/ultrastructure
  16. Husham A, Hazim Alkawaz M, Saba T, Rehman A, Saleh Alghamdi J
    Microsc Res Tech, 2016 Oct;79(10):993-997.
    PMID: 27476682 DOI: 10.1002/jemt.22733
    Segmentation of objects from a noisy and complex image is still a challenging task that needs to be addressed. This article proposed a new method to detect and segment nuclei to determine whether they are malignant or not (determination of the region of interest, noise removal, enhance the image, candidate detection is employed on the centroid transform to evaluate the centroid of each object, the level set [LS] is applied to segment the nuclei). The proposed method consists of three main stages: preprocessing, seed detection, and segmentation. Preprocessing stage involves the preparation of the image conditions to ensure that they meet the segmentation requirements. Seed detection detects the seed point to be used in the segmentation stage, which refers to the process of segmenting the nuclei using the LS method. In this research work, 58 H&E breast cancer images from the UCSB Bio-Segmentation Benchmark dataset are evaluated. The proposed method reveals the high performance and accuracy in comparison to the techniques reported in literature. The experimental results are also harmonized with the ground truth images.
    Matched MeSH terms: Cell Nucleus/ultrastructure*
  17. Niazi MKK, Abas FS, Senaras C, Pennell M, Sahiner B, Chen W, et al.
    PLoS One, 2018;13(5):e0196547.
    PMID: 29746503 DOI: 10.1371/journal.pone.0196547
    Automatic and accurate detection of positive and negative nuclei from images of immunostained tissue biopsies is critical to the success of digital pathology. The evaluation of most nuclei detection algorithms relies on manually generated ground truth prepared by pathologists, which is unfortunately time-consuming and suffers from inter-pathologist variability. In this work, we developed a digital immunohistochemistry (IHC) phantom that can be used for evaluating computer algorithms for enumeration of IHC positive cells. Our phantom development consists of two main steps, 1) extraction of the individual as well as nuclei clumps of both positive and negative nuclei from real WSI images, and 2) systematic placement of the extracted nuclei clumps on an image canvas. The resulting images are visually similar to the original tissue images. We created a set of 42 images with different concentrations of positive and negative nuclei. These images were evaluated by four board certified pathologists in the task of estimating the ratio of positive to total number of nuclei. The resulting concordance correlation coefficients (CCC) between the pathologist and the true ratio range from 0.86 to 0.95 (point estimates). The same ratio was also computed by an automated computer algorithm, which yielded a CCC value of 0.99. Reading the phantom data with known ground truth, the human readers show substantial variability and lower average performance than the computer algorithm in terms of CCC. This shows the limitation of using a human reader panel to establish a reference standard for the evaluation of computer algorithms, thereby highlighting the usefulness of the phantom developed in this work. Using our phantom images, we further developed a function that can approximate the true ratio from the area of the positive and negative nuclei, hence avoiding the need to detect individual nuclei. The predicted ratios of 10 held-out images using the function (trained on 32 images) are within ±2.68% of the true ratio. Moreover, we also report the evaluation of a computerized image analysis method on the synthetic tissue dataset.
    Matched MeSH terms: Cell Nucleus/pathology*
  18. Azmie Ghazali, Noordiyana Mat Noordin, Ambok Bolong Abol-munafi, Mohamad N. Azra, Mhd Ikhwanuddin
    Sains Malaysiana, 2017;46:2273-2280.
    This study was aimed to determine the ovarian maturation stages of wild and captive orange mud crab, Scylla olivacea fed with different diets via gonadosomatic status, oocyte diameter and histological examinations. Captive crabs were fed with blood cockle, Anadara granosa, or fish, Decapterus spp. Through the histological examinations, ovarian maturation stages of wild and captive S. olivaceawas classified into four stages: Immature (Stage 1), Early maturing (Stage 2), Pre-maturing (Stage 3) and Fully matured (Stage 4). Gonadosomatic Index of wild and captive crabs remained low during immature and 2 but increased significantly (p<0.05) in pre-maturing and 4 ovaries. Oocytes size were significantly different (p<0.05) in all ovarian maturation stages of wild and captive crabs. Follicle cells surround the oocyte of immature ovary and small yolk globules start to appear in early maturing ovary with large nucleus size. Oocyte size increased significantly (p<0.05) and yolk globule obviously appeared in pre-maturing ovary. Large and fused yolk globules appeared in the oocytes of fully matured ovary with nucleus was barely visible. The present study revealed that, ovarian maturation stages of S. olivacea are closely related to its morphological appearance and cellular development.
    Matched MeSH terms: Cell Nucleus; Cell Nucleus Size
  19. Fazalul Rahiman SS, Morgan M, Gray P, Shaw PN, Cabot PJ
    PLoS One, 2016;11(4):e0153005.
    PMID: 27055013 DOI: 10.1371/journal.pone.0153005
    Dynorphin 1-17, (DYN 1-17) opioid peptide produces antinociception following binding to the kappa-opioid peptide (KOP) receptor. Upon synthesis and release in inflamed tissues by immune cells, DYN 1-17 undergoes rapid biotransformation and yields a unique set of opioid and non-opioid fragments. Some of these major fragments possess a role in immunomodulation, suggesting that opioid-targeted therapeutics may be effective in diminishing the severity of inflammatory disorders. This study aimed to examine the immunomodulatory effects of DYN 1-17 and major N-terminal fragments found in the inflammatory environment on nuclear factor-kappaB/p65 (NF-κB/p65) nuclear translocation and the release of interleukin-1beta (IL-1β) and tumor necrosis factor-alpha (TNF-α) from lipopolysaccharide (LPS)-stimulated, differentiated THP-1 cells. The results demonstrate that NF-κB/p65 nuclear translocation was significantly attenuated following treatment with DYN 1-17 and a specific range of fragments, with the greatest reduction observed with DYN 1-7 at a low concentration (10 nM). Antagonism with a selective KOP receptor antagonist, ML-190, significantly reversed the inhibitory effects of DYN 1-17, DYN 1-6, DYN 1-7 and DYN 1-9, but not other DYN 1-17 N-terminal fragments (DYN 1-10 and 1-11) on NF-κB/p65 nuclear translocation. DYN 1-17 and selected fragments demonstrated differential modulation on the release of IL-1β and TNF-α with significant inhibition observed with DYN 1-7 at low concentrations (1 nM and 10 pM). These effects were blocked by ML-190, suggesting a KOP receptor-mediated pathway. The results demonstrate that DYN 1-17 and certain N-terminal fragments, produced in an inflamed environment, play an anti-inflammatory role by inhibiting NF-κB/p65 translocation and the subsequent cytokine release through KOP receptor-dependent and independent pathways.
    Matched MeSH terms: Cell Nucleus/metabolism*; Active Transport, Cell Nucleus/drug effects
  20. Ali SKI, Khandaker MU, Kassim HA
    Appl Radiat Isot, 2018 May;135:239-250.
    PMID: 29448240 DOI: 10.1016/j.apradiso.2018.01.035
    186
    Re (T1/2= 89.24 h, [Formula: see text] 346.7 keV, [Formula: see text] ), an intense beta-emitter shows great potential to be used as an active material in therapeutic radiopharmaceuticals due to its suitable physico-chemical properties.186Re can be produced in several ways, however charged-particle induced reactions show to be promising towards no carrier added production. In this work, production cross-sections of186Re were evaluated following the light-charged particle induced reactions on tungsten. An effective evaluation technique such as Simultaneous Evaluation on KALMAN code combined with least squares concept was used to obtain the evaluated data together with covariances. Knowledge of the underlying uncertainties in evaluated nuclear data, i.e., covariances are useful to improve the accuracy of nuclear data.
    Matched MeSH terms: Cell Nucleus
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