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Fulltext De novo transcriptome analysis shows differential expression of genes in salivary glands of edible bird's nest producing swiftlets

Looi QH, Amin H, Aini I, Zuki M, Omar AR

BMC Genomics, 2017 07 03;18(1):504.
PMID: 28673247 DOI: 10.1186/s12864-017-3861-9

BACKGROUND: Edible bird's nest (EBN), produced from solidified saliva secretions of specific swiftlet species during the breeding season, is one of the most valuable animal by-products in the world. The composition and medicinal benefits of EBN have been extensively studied, however, genomic and transcriptomic studies of the salivary glands of these birds have not been conducted.
RESULTS: The study described the transcriptomes of salivary glands from three swiftlet species (28 samples) generated by RNASeq. A total of 14,835 annotated genes and 428 unmapped genes were cataloged. The current study investigated the genes and pathways that are associated with the development of salivary gland and EBN composition. Differential expression and pathway enrichment analysis indicated that the expression of CREB3L2 and several signaling pathways involved in salivary gland development, namely, the EGFR, BMP, and MAPK signaling pathways, were up-regulated in swiftlets producing white EBN (Aerodramus fuciphagus) and black EBN (Aerodramus maximus) compared with non-EBN-producing swiftlets (Apus affinis). Furthermore, MGAT, an essential gene for the biosynthesis of N-acetylneuraminic acid (sialic acid), was highly expressed in both white- and black-nest swiftlets compared to non-EBN-producing swiftlets. Interspecies comparison between Aerodramus fuciphagus and Aerodramus maximus indicated that the genes involved in N-acetylneuraminic and fatty acid synthesis were up-regulated in Aerodramus fuciphagus, while alanine and aspartate synthesis pathways were up-regulated in Aerodramus maximus. Furthermore, gender-based analysis revealed that N-glycan trimming pathway was significantly up-regulated in male Aerodramus fuciphagus from its natural habitat (cave) compared to their female counterpart.
CONCLUSIONS: Transcriptomic analysis of salivary glands of different swiftlet species reveal differential expressions of candidate genes that are involved in salivary gland development and in the biosynthesis of various bioactive compounds found in EBN.

Matched MeSH terms: Avian Proteins/genetics*
Identification of three homologous latex-clearing protein (lcp) genes from the genome of Streptomyces sp. strain CFMR 7

Nanthini J, Ong SY, Sudesh K

Gene, 2017 Sep 10;628:146-155.
PMID: 28711667 DOI: 10.1016/j.gene.2017.07.039

Rubber materials have greatly contributed to human civilization. However, being a polymeric material does not decompose easily, it has caused huge environmental problems. On the other hand, only few bacteria are known to degrade rubber, with studies pertaining them being intensively focusing on the mechanism involved in microbial rubber degradation. The Streptomyces sp. strain CFMR 7, which was previously confirmed to possess rubber-degrading ability, was subjected to whole genome sequencing using the single molecule sequencing technology of the PacBio® RS II system. The genome was further analyzed and compared with previously reported rubber-degrading bacteria in order to identify the potential genes involved in rubber degradation. This led to the interesting discovery of three homologues of latex-clearing protein (Lcp) on the chromosome of this strain, which are probably responsible for rubber degrading activities. Genes encoding oxidoreductase α-subunit (oxiA) and oxidoreductase β-subunit (oxiB) were also found downstream of two lcp genes which are located adjacent to each other. In silico analysis reveals genes that have been identified to be involved in the microbial degradation of rubber in the Streptomyces sp. strain CFMR 7. This is the first whole genome sequence of a clear-zone-forming natural rubber- degrading Streptomyces sp., which harbours three Lcp homologous genes with the presence of oxiA and oxiB genes compared to the previously reported Gordonia polyisoprenivorans strain VH2 (with two Lcp homologous genes) and Nocardia nova SH22a (with only one Lcp gene).

Matched MeSH terms: Bacterial Proteins/genetics*
Fulltext Diversity and natural selection on the thrombospondin-related adhesive protein (TRAP) gene of Plasmodium knowlesi in Malaysia

Ahmed MA, Lau YL, Quan FS

Malar J, 2018 Jul 27;17(1):274.
PMID: 30053885 DOI: 10.1186/s12936-018-2423-1

BACKGROUND: Plasmodium knowlesi a parasite of the macaques is currently the most common cause of human malaria in Malaysia. The thrombospondin-related adhesive protein (TRAP) gene is pre-erythrocytic stage antigen. It is a well-characterized vaccine candidate in Plasmodium vivax and Plasmodium falciparum, however, no study has been done in the orthologous gene of P. knowlesi. This study investigates nucleotide diversity, haplotypes, natural selection and population differentiation of full-length pktrap genes in clinical samples from Malaysia.
METHODS: Forty full-length pktrap sequences from clinical isolates of Malaysia along with the reference H-strain were downloaded from published databases. Genetic diversity, polymorphism, haplotype and natural selection were determined using DnaSP 5.10 software. McDonald-Kreitman test was conducted using P. vivax and Plasmodium coatneyi as ortholog sequence in DnaSP 5.10 software. Population genetic differentiation index (FST) of parasite populations was determined using Arlequin v3.5. Phylogenetic relationships between trap ortholog genes were determined using MEGA 5.0 software.
RESULTS: Comparison of 40 full-length pktrap sequences along with the H-strain identified 74 SNPs (53 non-synonymous and 21 synonymous substitutions) resulting in 29 haplotypes. Analysis of the full-length gene showed that the nucleotide diversity was lower compared to its nearest ortholog pvtrap. Domain-wise analysis indicated that the proline/asparagine rich region had higher nucleotide diversity compared to the von Willebrand factor domain and the thrombospondin-type-1 domain. McDonald-Kreitman test identified that the ratio of the number of nonsynonymous to synonymous polymorphic sites within P. knowlesi was significantly higher than that of the number of nonsynonymous to synonymous fixed sites between P. knowlesi and P. vivax. The von Willebrand factor domain also indicated balancing selection using MK test, however, it did not give significant results when tested with P. coatneyi as an outgroup. Phylogenetic analysis of full-length genes identified three distinct sub-clusters of P. knowlesi, one originating from Peninsular Malaysia and two originating from Malaysian Borneo. High population differentiation values was observed within samples from Peninsular Malaysia and Malaysian Borneo.
CONCLUSIONS: This study is the first to report on the genetic diversity and natural selection of full-length pktrap. Low level of genetic diversity was found across the full-length gene of pktrap. Balancing selection of the von Willebrand factor domain indicated that TRAP could be a target in inducing immune response against P. knowlesi infections. However, higher number of samples would be necessary to further confirm the findings.

Matched MeSH terms: Protozoan Proteins/genetics*
Enzymatic synthesis of quercetin oleate esters using Candida antarctica lipase B

Saik AY, Lim YY, Stanslas J, Choo WS

Biotechnol Lett, 2017 Feb;39(2):297-304.
PMID: 27812823 DOI: 10.1007/s10529-016-2246-5

OBJECTIVES: To investigate the lipase-catalyzed acylation of quercetin with oleic acid using Candida antarctica lipase B.
RESULTS: Three acylated analogues were produced: quercetin 4'-oleate (C33H42O8), quercetin 3',4'-dioleate (C51H74O9) and quercetin 7,3',4'-trioleate (C69H106O10). Their identities were confirmed with UPLC-ESI-MS and (1)H NMR analyses. The effects of temperature, duration and molar ratio of substrates on the bioconversion yields varied across conditions. The regioselectivity of the acylated quercetin analogues was affected by the molar ratio of substrates. TLC showed the acylated analogues had higher lipophilicity (152% increase) compared to quercetin. Partition coefficient (log P) of quercetin 4'-oleate was higher than those of quercetin and oleic acid. Quercetin 4'-oleate was also stable over 28 days of storage.
CONCLUSIONS: Quercetin oleate esters with enhanced lipophilicity can be produced via lipase-catalyzed reaction using C. antarctica lipase B to be used in topical applications.

Matched MeSH terms: Fungal Proteins/metabolism*
Samira-VP: A simple protein alignment method with rechecking the alphabet vector positions

Fotoohifiroozabadi S, Mohamad MS, Deris S

J Bioinform Comput Biol, 2017 Apr;15(2):1750004.
PMID: 28274174 DOI: 10.1142/S0219720017500044

Protein structure alignment and comparisons that are based on an alphabetical demonstration of protein structure are more simple to run with faster evaluation processes; thus, their accuracy is not as reliable as three-dimension (3D)-based tools. As a 1D method candidate, TS-AMIR used the alphabetic demonstration of secondary-structure elements (SSE) of proteins and compared the assigned letters to each SSE using the [Formula: see text]-gram method. Although the results were comparable to those obtained via geometrical methods, the SSE length and accuracy of adjacency between SSEs were not considered in the comparison process. Therefore, to obtain further information on accuracy of adjacency between SSE vectors, the new approach of assigning text to vectors was adopted according to the spherical coordinate system in the present study. Moreover, dynamic programming was applied in order to account for the length of SSE vectors. Five common datasets were selected for method evaluation. The first three datasets were small, but difficult to align, and the remaining two datasets were used to compare the capability of the proposed method with that of other methods on a large protein dataset. The results showed that the proposed method, as a text-based alignment approach, obtained results comparable to both 1D and 3D methods. It outperformed 1D methods in terms of accuracy and 3D methods in terms of runtime.

Matched MeSH terms: Proteins/chemistry*
Fulltext JMJD8 is a positive regulator of TNF-induced NF-κB signaling

Yeo KS, Tan MC, Wong WY, Loh SW, Lam YL, Tan CL, et al.

Sci Rep, 2016 Sep 27;6:34125.
PMID: 27671354 DOI: 10.1038/srep34125

TNF-induced signaling mediates pleiotropic biological consequences including inflammation, immunity, cell proliferation and apoptosis. Misregulation of TNF signaling has been attributed as a major cause of chronic inflammatory diseases and cancer. Jumonji domain-containing protein 8 (JMJD8) belongs to the JmjC family. However, only part of the family members has been described as hydroxylase enzymes that function as histone demethylases. Here, we report that JMJD8 positively regulates TNF-induced NF-κB signaling. Silencing the expression of JMJD8 using RNA interference (RNAi) greatly suppresses TNF-induced expression of several NF-κB-dependent genes. Furthermore, knockdown of JMJD8 expression reduces RIP ubiquitination, IKK kinase activity, delays IκBα degradation and subsequently blocks nuclear translocation of p65. In addition, JMJD8 deficiency enhances TNF-induced apoptosis. Taken together, these findings indicate that JMJD8 functions as a positive regulator of TNF-induced NF-κB signaling.

Matched MeSH terms: Nuclear Proteins; Repressor Proteins
Molecular Modeling and Simulation of Transketolase from Orthosiphon stamineus

Ng ML, Rahmat ZB, Bin Omar MSS

Curr Comput Aided Drug Des, 2019;15(4):308-317.
PMID: 30345923 DOI: 10.2174/1573409914666181022141753

BACKGROUND: Orthosiphon stamineus is a traditional medicinal plant in Southeast Asia countries with various well-known pharmacological activities such as antidiabetic, diuretics and antitumor activities. Transketolase is one of the proteins identified in the leaves of the plant and transketolase is believed able to lower blood sugar level in human through non-pancreatic mechanism. In order to understand the protein behavioral properties, 3D model of transketolase and analysis of protein structure are of obvious interest.
METHODS: In the present study, 3D model of transketolase was constructed and its atomic characteristics revealed. Besides, molecular dynamic simulation of the protein at 310 K and 368 K deciphered transketolase may be a thermophilic protein as the structure does not distort even at elevated temperature. This study also used the protein at 310 K and 368 K resimulated back at 310 K environment.
RESULTS: The results revealed that the protein is stable at all condition which suggest that it has high capacity to adapt at different environment not only at high temperature but also from high temperature condition to low temperature where the structure remains unchanged while retaining protein function.
CONCLUSION: The thermostability properties of transketolase is beneficial for pharmaceutical industries as most of the drug making processes are at high temperature condition.

Matched MeSH terms: Plant Proteins/chemistry*
Fulltext Effect of Dual-Task Conditions on Gait Performance during Timed Up and Go Test in Children with Traumatic Brain Injury

Abdul Rahman RA, Rafi F, Hanapiah FA, Nikmat AW, Ismail NA, Manaf H

Rehabil Res Pract, 2018;2018:2071726.
PMID: 30402290 DOI: 10.1155/2018/2071726

Background: Tasks requiring simultaneous mobility and cognition (dual tasks) have been associated with incidence of falls. Although these deficits have been documented in individuals with neurologic disorder, the effect of dual task in children with traumatic brain injury has not been fully explored.
Objective: To investigate the effect of dual-task (dual-motor and dual-cognitive task) conditions on spatiotemporal gait parameters during timed up and go test in children with traumatic brain injury.
Methods and Material: A total of 14 children with traumatic brain injury and 21 typically developing children participated in this case-control study. Functional balance was assessed before the actual testing to predict the risk of falls. Timed up and go test was performed under single-task and dual-task (dual-motor and dual-cognitive task) conditions. Spatiotemporal gait parameters were determined using the APDM Mobility Lab system. The descriptive statistics and t-test were used to analyze demographic characteristics and repeated measure ANOVA test was used to analyze the gait parameters.
Results: Under dual-task (dual-motor and dual-cognitive task) conditions during the timed up and go test, gait performance significantly deteriorated. Furthermore, the total time to complete the timed up and go test, stride velocity, cadence, and step time during turning were significantly different between children with traumatic brain injury and typically developing children.
Conclusions: These findings suggest that gait parameters were compromised under dual-task conditions in children with traumatic brain injury. Dual-task conditions may become a component of gait training to ensure a complete and comprehensive rehabilitation program.

Matched MeSH terms: Nerve Tissue Proteins; RNA-Binding Proteins
Fulltext Correlation between defense mechanisms and readiness to change among relapsing addicts

Farhana Sabri, Zahidah Mustafa, Mohd Yahya Mohamed Ariffin

Malaysian Journal of Social Sciences and Humanities, 2018;3(4):30-34.
MyJurnal

The number of relapsing addicts is increasingly worrying from year to year. This study was conducted
to examine at the relationship between defense mechanisms and the level of readiness to change in
relapsing addicts. Although the drug addicts have been treated at the treatment center, however,
repeated cases of drug addicts still occur. Six research questions were developed to see how far the
variables consisting of defense mechanisms could correlate with readiness to change among addicts
who were undergoing treatment. This study was carried out involving 125 addicts in two separate
treatment centers in Melaka and Selangor. The selected sample were addicts who have undergone a
relapse phase at least once in drug addiction. Statistical data analysis using Statistical Packages for
Social Sciences 20 (SPSS-20) were used to analyze the data. Statistical descriptive is used to view the
results of demographic data constructed. T-test and ANOVA are used to see the relationship between
the variables. The regression analysis is used to predict the defense mechanisms with the stage of
readiness to change among relapsing addicts. The results showed that the defense mechanism had a
significant relationship to the stage of readiness to change among samples. The results of this study
provide information on treatment services in the drug rehabilitation to improve the treatment method
appropriately to the drug addicts in preventing relapse.

Matched MeSH terms: Nerve Tissue Proteins; RNA-Binding Proteins
Use of hyperbaric oxygen therapy (HBOT) in chronic diabetic wound - A randomised trial

Nik Hisamuddin NAR, Wan Mohd Zahiruddin WN, Mohd Yazid B, Rahmah S

Med J Malaysia, 2019 Oct;74(5):418-424.
PMID: 31649219

INTRODUCTION: The purpose of this study was to investigate the effect of hyperbaric oxygen therapy (HBOT) towards diabetic foot ulcer (DFU) patients in addition to the standard wound care management.
METHODS: Fifty-eight diabetic patients with ulcers at Wagner Grade 2 and above involved in this study after presented at two study centres of tertiary teaching hospitals. The assigned patients received conventional wound care with additional HBOT given at 2.4 ATA for 90 minutes. Patients in the control group who received conventional wound care only were treated and observed for 30 days. The progress of wound healing was observed and measured at day 0, 10, 20 and 30 of study. The data collected were analysed using SPSS software (ver. 22) to study the association of HBOT towards healing of the diabetic foot ulcers.
RESULTS: Repeated Measures ANOVA analysis with Greenhouse-Geisser correction indicated that the means of wound size over time points (Day 0, 10, 20 and 30) among patients under HBOT group were statistically significantly different [F(1,61)=30.86, p<0.001)] compared to conventional therapy group. Multiple logistic regression analysis showed that HBOT group has nearly 44 times higher odds to achieve at least 30% wound size reduction within the study period (95%CI: 7.18, 268.97, p<0.001).
CONCLUSION: The results obtained in this study indicated that as an adjunctive therapy to conventional wound care, HBOT affected the rate of healing in diabetic foot ulcers significantly in terms of wound size reduction when compared to administering the conventional wound care alone.

Matched MeSH terms: Nerve Tissue Proteins; RNA-Binding Proteins
Fulltext Zika Virus as Oncolytic Therapy for Brain Cancer: Myth or Reality?

Su KY, Balasubramaniam VRMT

Front Microbiol, 2019;10:2715.
PMID: 31824472 DOI: 10.3389/fmicb.2019.02715

The ability of self-replicating oncolytic viruses (OVs) to preferentially infect and lyse cancer cells while stimulating anti-tumor immunity of the host strongly indicates its value as a new field of cancer therapeutics to be further explored. The emergence of Zika virus (ZIKV) as a global health threat due to its recent outbreak in Brazil has caught the attention of the scientific community and led to the discovery of its oncolytic potential for the treatment of glioblastoma multiforme (GBM), the most common and fatal brain tumor with poor prognosis. Herein, we evaluate the neurotropism of ZIKV relative to the receptor tyrosine kinase AXL and its ligand Gas6 in viral entry and the RNA-binding protein Musashi-1 (MSI1) in replication which are also overexpressed in GBM, suggesting its potential for specific targeting of the tumor. Additionally, this review discusses genetic modifications performed to enhance safety and efficacy of ZIKV as well as speculates future directions for the OV therapy.

Matched MeSH terms: Proto-Oncogene Proteins; RNA-Binding Proteins
Kesan kelompok bimbingan ke atas konsep kendiri, penilaian konsep kendiri-rakan sebaya, daya tahan dan kelangsangan remaja pertengahan yang sederhana rendah konsep kendiri

Mohammad Aziz Shah MA, Yusooff F

Jurnal Psikologi Malaysia, 2010;olume 24:31-47.

The objective of this experimental study is to investigate the effectiveness of smalla dn big group guidance on the self-concept of the adolescence, using cognitive behaviour therapy and multidimentional self-concept model. The effectiveness of this interventions is measured by looking at the improvement of self concept and the evaluation of self concept by peer group, resiliency and decrease of aggressiveness in the experiment group. This research was carried out among the form four student of two secondary schools in Selangor. The measurement used in this study are questionnaire about personal information, Multi dimentional self concept scale. resiliency scale and aggressiveness scale. A total of 104 subject were selected for this research and they were divided into two groups: controlled and experimental group. The subject in experimental group are given about eight sessions of group guidance within eight weeks. The data were analysed using descriptive analysis, ANOVA, MANCOVA and post hoc test. The result showed that the treatment used in the intervention were effective in improving the self concept and the evaluation of the self concept. The finding implies that the small and big group guidance using cognitive behaviour therapy and multi dimentional self concept model has an effect on the self concept of the student.

Matched MeSH terms: Nerve Tissue Proteins; RNA-Binding Proteins
Effects of soil chemical properties and seasonality on mycorrhizal status of prickly pear (opuntia ficus-indica) planted in hot arid Steppe rangelands

Souad Neffar, Haroun Chenchouni, Arifa Beddiar

Sains Malaysiana, 2015;44:671-680.

Mycorrhizal fungi are an essential component to consider for better management of soil fertility, particularly in
degraded rangelands of drylands. The present article presents a field survey of colonization and intensity of arbuscular
mycorrhizal fungi (AMF) on prickly pear (Opuntia ficus-indica) roots from young (5 years old) and old (more than 20
years) plantations. The results observed were explained by seasonality and edaphic factors. Prickly pear roots showed
a mycorrhizal frequency (F%) up to 100% of colonization and a mycorrhizal intensity (M%) that may exceed 70%.
According to ANOVAs, both F% and M% varied significantly between Prickly pear plantation ages, but only M% between
seasons. The Generalized linear model showed that edaphic factors have no effect on the variation of F%. However
the statistical model showed that M% were significantly influenced by active CaCO3
, organic matter, carbon, nitrogen,
phosphorus contents and C/N. Our findings highlight the importance of mycorrhization in rehabilitation programs of
degraded rangelands by prickly pear plantations in semiarid and arid lands, particularly during early plant ages and
under environmental abiotic stresses such as climate and soil type.

Matched MeSH terms: Nerve Tissue Proteins; RNA-Binding Proteins
Fulltext Roles of Carotenoids in Invertebrate Immunology

Tan K, Zhang H, Lim LS, Ma H, Li S, Zheng H

Front Immunol, 2019;10:3041.
PMID: 32010132 DOI: 10.3389/fimmu.2019.03041

Carotenoids are biologically active pigments that are well-known to enhance the defense and immunity of the vertebrate system. However, in invertebrates, the role of carotenoids in immunity is not clear. Therefore, this study aims to review the scientific evidence for the role of carotenoids in invertebrate immunization. From the analysis of published literatures and recent studies from our laboratory, it is obvious that carotenoids are involved in invertebrate immunity in two ways. On the one hand, carotenoids can act as antioxidant enzymes to remove singlet oxygen, superoxide anion radicals, and hydroxyl radicals, thereby reducing SOD activity and reducing the cost of immunity. In some organisms, carotenoids have been shown to promote SOD activity by up-regulating the expression of the ZnCuSOD gene. Carotenoids, on the other hand, play a role in the expression and regulation of many genes involved in invertebrate immunity, including thioredoxins (TRX), peptidoglycan recognition receptor proteins (PGRPs), ferritins, prophenoloxidase (ProPO), vitellogenin (Vg), toll-like receptor (TLRs), heat shock proteins (HSPs), and CuZnSOD gene. The information in this review is very useful for updating our understanding of the progress of carotenoid research in invertebrate immunology and to help identify topics for future topics.

Matched MeSH terms: Carrier Proteins; Heat-Shock Proteins
Diverse and dynamic roles of F-box proteins in plant biology

Abd-Hamid NA, Ahmad-Fauzi MI, Zainal Z, Ismail I

Planta, 2020 Feb 18;251(3):68.
PMID: 32072251 DOI: 10.1007/s00425-020-03356-8

The SCF complex is a widely studied multi-subunit ring E3 ubiquitin ligase that tags targeted proteins with ubiquitin for protein degradation by the ubiquitin 26S-proteasome system (UPS). The UPS is an important system that generally keeps cellular events tightly regulated by purging misfolded or damaged proteins and selectively degrading important regulatory proteins. The specificity of this post-translational regulation is controlled by F-box proteins (FBPs) via selective recognition of a protein-protein interaction motif at the C-terminal domain. Hence, FBPs are pivotal proteins in determining the plant response in multiple scenarios. It is not surprising that the FBP family is one of the largest protein families in the plant kingdom. In this review, the roles of FBPs, specifically in plants, are compiled to provide insights into their involvement in secondary metabolites, plant stresses, phytohormone signalling, plant developmental processes and miRNA biogenesis.

Matched MeSH terms: F-Box Proteins/metabolism*
Effects of different doses of fertilizers on growth and yield components of biodiesel plant (jatropha curcas l.)

Inam Ali Shah, Sultan Mehmod Wazir, Rahmat Ali Khan

Sains Malaysiana, 2017;46:117-122.

Effects of different doses of fertilizers on growth and yield components of biodiesel plant (Jatropha curcas L.), was
made in the prevailing environment of University of Science and Technology Bannu. The experiment was carried out in
randomized complete block design (RCBD) with three replications. Nitrogen, phosphorus and potassium were applied
in the form of urea, single super phosphate and potash in the shape of combined NPK, respectively, during sprouting
of leaves and thereafter with each irrigation in split doses. The analysis of variance for number of branches per plant
showed significant results indicated in ANOVA. Significantly the number of primary branches per plant 8.07 was recorded
in T4 with the application of dose of (N P K: 2507.5 gm: 1091.5 gm: 501.5 gm). Maximum No. of secondary branches
per plant (9.100) were recorded in T1 especially at both plots. Flower per inflorescence showed that maximum value
(122.810) was recorded in T5 of especially at both plots. Inflorescence plant-1 showed that maximum value (39.477) were
recorded in T1 and minimum value were noted as (12.733) at T3 on both the flats. The data for fruits per plant showed
that maximum value (143.300) was recorded in T1. The seed index, which was the output of the aim of this research work,
reflects highly significant differences in mean value observed for both subplots. Mean values showed that maximum seeds
weight 45.86 was recorded in T1 of especially at both plots while low seed index was noted as 22.84 at T5 (N: 3400 gm,
P: 1480 gm, K: 680 gm) at both the subplots.

Matched MeSH terms: Nerve Tissue Proteins; RNA-Binding Proteins
Arabidopsis at2g02870 loss of function mutants lead to enhanced production of hydroperoxide lyase pathway genes and products

Muhammad Naeem-ul-Hassan, Zamri Zainal, Ismanizan Ismail, Nur Athirah Abd Hamid, Muhammad Sajad

Sains Malaysiana, 2018;47:3003-3008.

F-box proteins containing variable C-terminal domains make an essential part of SKP1-Cullin-Ring box-F box (SCF)
complex. SCF complex catalyzes the final step to link the ubiquitin tag with the target protein, destined for degradation,
through F-box protein that confer overall substrate specificity to the complex. In this study, we analyzed the role of
At2g02870, a Kelch containing F-box protein from Arabidopsis thaliana, by using reverse genetics strategy. At2g02870
loss of function mutant lines (at2g02870) were analyzed and compared with wild type plants for the expression of genes
and products of hydroperoxide lyase (HPL) branch of oxylipin pathway. We found that the at2g02870 plants have enhanced
expression of HPL pathway genes and produce more green leaf volatiles (GLV) than the wild type plants. Our results
suggested that the gene is involved in the regulation of HPL pathway, possibly through the degradation of enzymes or/
and the regulatory factors of the pathway.

Matched MeSH terms: F-Box Proteins; Cullin Proteins
Scale morphologies of freshwater fishes at Tembat Forest Reserve, Terengganu, Malaysia

Farah Ayuni Farinordin, Wan Seribani Wan Nilam, Shahril Mod Husin, Abdullah Samat, Shukor Md. Nor

Sains Malaysiana, 2017;46:1429-1439.

Scales are calcium carbonate and collagen-contained structures embedded within the fish epidermis and useful for
species identification. This study aimed to describe morphological characteristics of scales and use the differences to
prepare keys to species. Fishes were sampled from selected rivers of Tembat Forest Reserve, Hulu Terengganu. Specimens
caught were from 3 families (Cyprinidae, Channidae, Nandidae) and 17 species. Each species was represented by ten
individuals (size ranges 2.5 - 50 cm TL). The scales were removed, soaked in H2
O2
(0.5%), NH3 (0.3%), DH2
O and
mounted between a pair of glass slides for digital photographing. The morphological descriptions were based on types
of scales, distinctiveness of radii arrangement at the anterior field, radii cover, radii distribution, overall shape, focus
position and focus pattern. Keys to species were constructed based on these scale morphological characters described.
Measurements of scale total length (L), total width (W), rostral field length (L1) and caudal field length (L2) of the scales
were taken using Image J software. The inter-specific variation among scales was indicated by L1/L, L2/L, L1/L2 and
W/L indices through multiple comparison tests (ANOVA). It was found that all 17 species showed significant differences
with at least one other species in all four indices. Pristolepis grootii (Bleeker 1852) was the only one that significantly
different (p<0.05) from other 16 species in the first three indices. Species that showed the least significant differences
among species was Probarbus jullieni (Sauvage 1880). The differences among the scales were primarily due to the
different types of scale that was either ctenoid or cycloid.

Matched MeSH terms: Nerve Tissue Proteins; RNA-Binding Proteins
Fulltext Proline Homeostasis in Saccharomyces cerevisiae: How Does the Stress-Responsive Transcription Factor Msn2 Play a Role?

Mat Nanyan NSB, Takagi H

Front Genet, 2020;11:438.
PMID: 32411186 DOI: 10.3389/fgene.2020.00438

Overexpression of MSN2, which is the transcription factor gene in response to stress, is well-known to increase the tolerance of the yeast Saccharomyces cerevisiae cells to a wide variety of environmental stresses. Recent studies have found that the Msn2 is a feasible potential mediator of proline homeostasis in yeast. This result is based on the finding that overexpression of the MSN2 gene exacerbates the cytotoxicity of yeast to various amino acid analogs whose uptake is increased by the active amino acid permeases localized on the plasma membrane as a result of a dysfunctional deubiquitination process. Increased understanding of the cellular responses induced by the Msn2-mediated proline incorporation will provide better comprehension of how cells respond to and counteract to different kinds of stimuli and will also contribute to the breeding of industrial yeast strains with increased productivity.

Matched MeSH terms: DNA-Binding Proteins; Saccharomyces cerevisiae Proteins
Fulltext Camel whey protein hydrolysates induced G2/M cellcycle arrest in human colorectal carcinoma

Murali C, Mudgil P, Gan CY, Tarazi H, El-Awady R, Abdalla Y, et al.

Sci Rep, 2021 03 29;11(1):7062.
PMID: 33782460 DOI: 10.1038/s41598-021-86391-z

Camel milk has been gaining immmense importance due to high nutritious value and medicinal properties. Peptides from milk proteins is gaining popularity in various therapeutics including human cancer. The study was aimed to investigate the anti-cancerous and anti-inflammatory properties of camel whey protein hydrolysates (CWPHs). CWPHs were generated at three temperatures (30 ℃, 37 ℃, and 45 ℃), two hydrolysis timepoints (120 and 360 min) and with three different enzyme concentrations (0.5, 1 and 2 %). CWPHs demonstrated an increase in anti-inflammatory effect between 732.50 (P-6.1) and 3779.16 (P-2.1) µg Dicolfenac Sodium Equivalent (DSE)/mg protein. CWPHs (P-4.3 & 5.2) inhibited growth of human colon carcinoma cells (HCT116) with an IC50 value of 231 and 221 μg/ml, respectively. P-4.3 induced G2/M cell cycle arrest and modulated the expression of Cdk1, p-Cdk1, Cyclin B1, p-histone H3, p21 and p53. Docking of two peptides (AHLEQVLLR and ALPNIDPPTVER) from CWPHs (P-4.3) identified Polo like kinase 1 as a potential target, which strongly supports our in vitro data and provides an encouraging insight into developing a novel peptide-based anticancer formulation. These results suggest that the active component, CWPHs (P-4.3), can be further studied and modeled to form a small molecule anti-cancerous therapy.

Matched MeSH terms: Whey Proteins/pharmacology*

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