Displaying publications 341 - 360 of 2542 in total

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  1. Four new species of pholcine spiders (Araneae: Pholcidae) from Southeast Asia
    Yao Z, Li S, Jäger P
    Zootaxa, 2014;3793:331-49.
    PMID: 24870173 DOI: 10.11646/zootaxa.3793.3.2
    Four new species belonging to four genera of the subfamily Pholcinae are reported from Southeast Asia: Belisana protumida spec. nov. (male, female), Khorata bayeri spec. nov. (male), Pholcus schawalleri spec. nov. (male), and Uthina khaosokensis spec. nov. (male).
    Matched MeSH terms: Spiders/classification*
  2. Ancyronyx reticulatus and A. pulcherrimus, two new riffle beetle species from Borneo, and discussion about elmid plastron structures (Coleoptera: Elmidae)
    Kodada J, Jäch MA, Ciampor F
    Zootaxa, 2014;3760:383-95.
    PMID: 24870088 DOI: 10.11646/zootaxa.3760.3.5
    Two new species of Ancyronyx Erichson, 1847 (Coleoptera: Elmidae) are described from Borneo: A. pulcherrimus (Brunei) and A. reticulatus (Sabah). Habitus views, illustrations of important characters as well as plastron structures of Ancyronyx reticulatus are presented and discussed.
    Matched MeSH terms: Beetles/classification*
  3. Fulltext Utility of DNA barcoding for rapid and accurate assessment of bat diversity in Malaysia in the absence of formally described species
    Wilson JJ, Sing KW, Halim MR, Ramli R, Hashim R, Sofian-Azirun M
    Genet. Mol. Res., 2014;13(1):920-5.
    PMID: 24634112 DOI: 10.4238/2014.February.19.2
    Bats are important flagship species for biodiversity research; however, diversity in Southeast Asia is considerably underestimated in the current checklists and field guides. Incorporation of DNA barcoding into surveys has revealed numerous species-level taxa overlooked by conventional methods. Inclusion of these taxa in inventories provides a more informative record of diversity, but is problematic as these species lack formal description. We investigated how frequently documented, but undescribed, bat taxa are encountered in Peninsular Malaysia. We discuss whether a barcode library provides a means of recognizing and recording these taxa across biodiversity inventories. Tissue was sampled from bats trapped at Pasir Raja, Dungun Terengganu, Peninsular Malaysia. The DNA was extracted and the COI barcode region amplified and sequenced. We identified 9 species-level taxa within our samples, based on analysis of the DNA barcodes. Six specimens matched to four previously documented taxa considered candidate species but currently lacking formal taxonomic status. This study confirms the high diversity of bats within Peninsular Malaysia (9 species in 13 samples) and demonstrates how DNA barcoding allows for inventory and documentation of known taxa lacking formal taxonomic status.
    Matched MeSH terms: Chiroptera/classification*
  4. Two new species of Simulium (Gomphostilbia) (Diptera: Simuliidae) from peninsular Malaysia, with keys to 10 peninsular Malaysian species of the Simulium batoense species group
    Takaoka H, Sofian-Azirun M, Ya'Cob Z
    J Med Entomol, 2014 Jan;51(1):10-26.
    PMID: 24605448
    Two new blackfly species, Simulium (Gomphostilbia) azhari and Simulium (Gomphostilbia) johorense, are described based on adult females, males, pupae, and larvae collected from Peninsular Malaysia, and assigned to the parahiyangum subgroup and the duolongum subgroup of the batoense species group of the subgenus Comphostilbia, respectively. S. (G.) azhari sp. nov. is characterized in the female by the narrow frons, and in the male by the broad style and the ventral plate moderately produced ventrally. S. (G.) johorense sp. nov. is also remarkable in having the female subcosta lacking hairs or bearing a reduced number of hairs ranging from one to five. The pupae of both new species share a similar arrangement of the eight gill filaments (i.e., stalks of dorsal and middle triplets and ventral pair arising at the same level from the short common basal stalk), although relative lengths of filaments of the ventral pair to those of the dorsal and middle triplets are different between the two new species. Taxonomic notes are given to distinguish these new species from other related species. Keys to identify all 10 species of the batoense species group in Peninsular Malaysia are provided for adult females, males, pupae, and mature larvae.
    Matched MeSH terms: Simuliidae/classification*
  5. Molecular phylogeny of Rigidoporus microporus isolates associated with white rot disease of rubber trees (Hevea brasiliensis)
    Oghenekaro AO, Miettinen O, Omorusi VI, Evueh GA, Farid MA, Gazis R, et al.
    Fungal Biol, 2014 May-Jun;118(5-6):495-506.
    PMID: 24863478 DOI: 10.1016/j.funbio.2014.04.001
    Rigidoporus microporus (Polyporales, Basidiomycota) syn. Rigidoporus lignosus is the most destructive root pathogen of rubber plantations distributed in tropical and sub-tropical regions. Our primary objective was to characterize Nigerian isolates from rubber tree and compare them with other West African, Southeast Asian and American isolates. To characterize the 20 isolates from Nigeria, we used sequence data of the nuclear ribosomal DNA ITS and LSU, β-tubulin and translation elongation factor 1-α (tef1) gene sequences. Altogether, 40 isolates of R. microporus were included in the analyses. Isolates from Africa, Asia and South/Central America formed three distinctive clades corresponding to at least three species. No phylogeographic pattern was detected among R. microporus collected from West and Central African rubber plantations suggesting continuous gene flow among these populations. Our molecular phylogenetic analysis suggests the presence of two distinctive species associated with the white rot disease. Phylogenetic analyses placed R. microporus in the Hymenochaetales in the vicinity of Oxyporus. This is the first study to characterize R. microporus isolates from Nigeria through molecular phylogenetic techniques, and also the first to compare isolates from rubber plantations in Africa and Asia.
    Matched MeSH terms: Polyporales/classification*
  6. Two new species of Quasithelazia Maplestone, 1932 (Nematoda: Acuariidae) from Malaysia, with an amended diagnosis and review of the genus
    Mutafchiev Y, Mariaux J, Georgiev BB
    Syst Parasitol, 2014 Jun;88(2):103-17.
    PMID: 24832183 DOI: 10.1007/s11230-014-9483-6
    Quazithelazia rostrata n. sp. from Ceyx erithaca (L.) (type-host) and Alcedo euryzona Temminck (Coraciiformes, Alcedinidae) and Q. alata n. sp. from Enicurus ruficapillus Temminck (Passeriformes, Muscicapidae) are described from vicinities of Gombak Biological Station, Selangor, Malaysia; both species are parasitic under the koilin lining of the gizzard. Paratypes of Schistogendra pelargopsis Nandi, De & Majumdar, 1985, a parasite of Pelargopsis capensis (L.) (Alcedinidae) from India, are redescribed and the species is recognised as a junior synonym of the type-species of Quasithelazia, Q. tenuis Maplestone, 1932 (new synonymy), a species originally described from Halcyon smyrnensis (L.) (Alcedinidae) in India. An amended diagnosis of the genus Quasithelazia Maplestone, 1932 is proposed. Currently, this genus includes eight species occurring in the Old World, six of them parasitic in kingfishers (Alcedinidae) and two species parasitic in flycatchers (Muscicapidae). These include, inter alia, Q. halcyoni n. comb. for Viktorocara halcyoni Ryzhikov & Khokhlova, 1964 from Halcyon smyrnensis and H. pileata (Boddaert) in Vietnam and the Russian Far East, Q. microcordonis n. comb. for Rusguniella microcordonis Schmidt & Kuntz, 1971 from Halcyon coromanda major (Temminck & Schlegel) in Taiwan and Q. multipapillata n. comb. for Schistogendra multipapillata Zhang, 1993 from Tarsiger cyanurus (Pallas) (Muscicapidae) in China. Comparative morphological data for Quasithelazia spp. are presented. Schistogendra oligopapillata Zhang & An, 2002 from domestic ducks in China is considered a species incertae sedis.
    Matched MeSH terms: Nematoda/classification*
  7. Feature extraction using Hough transform for solid waste bin level detection and classification
    Hannan MA, Zaila WA, Arebey M, Begum RA, Basri H
    Environ Monit Assess, 2014 Sep;186(9):5381-91.
    PMID: 24829160 DOI: 10.1007/s10661-014-3786-6
    This paper deals with the solid waste image detection and classification to detect and classify the solid waste bin level. To do so, Hough transform techniques is used for feature extraction to identify the line detection based on image's gradient field. The feedforward neural network (FFNN) model is used to classify the level content of solid waste based on learning concept. Numbers of training have been performed using FFNN to learn and match the targets of the testing images to compute the sum squared error with the performance goal met. The images for each class are used as input samples for classification. Result from the neural network and the rules decision are used to build the receiver operating characteristic (ROC) graph. Decision graph shows the performance of the system waste system based on area under curve (AUC), WS-class reached 0.9875 for excellent result and WS-grade reached 0.8293 for good result. The system has been successfully designated with the motivation of solid waste bin monitoring system that can applied to a wide variety of local municipal authorities system.
    Matched MeSH terms: Solid Waste/classification
  8. A comparison of weed communities of coastal rice fields in Peninsular Malaysia
    Hakim MA, Juraimi AS, Hanafi MM, Selamat A
    J Environ Biol, 2013 Sep;34(5):847-56.
    PMID: 24558797
    A survey was conducted at 100 different rice fields in coastal areas of West Malaysia to identify most common and prevalent weeds associated with rice. Fields surveyed were done according to the quantitative survey method by using 0.5m x 0.5m size quadrate with 20 samples from each field. A total of 53 different weed species belong to 18 families were identified of which 32 annual and 21 perennial; 12 grassy, 13 sedges and 28 broadleaved weeds. Based on relative abundance the most prevalent and abundant weed species were selected in the coastal rice field. Among the 10 most abundant weed species, there were four grasses viz. Echinochloa crusgalli, Leptochloo chinensis, Echinochloo colona, Oryza sotivo L. (weedy rice).; four sedges viz. Fimbristylis miliacea, Cyperus iria, Cyperus difformis, Scirpus grossus and two broadleaved weeds viz. Sphenocleo zeylonica, Jussiaea linifolio. Leptochloa chinensis, E. crusgalli, F. miliocea, E. colona were more prevalent and abundant species out of the 10 most dominant weed species in the coastal rice field of Peninsular Malaysia.
    Matched MeSH terms: Plant Weeds/classification
  9. Fulltext Allelopathic effects of litter Axonopus compressus against two weedy species and its persistence in soil
    Samedani B, Juraimi AS, Rafii MY, Anuar AR, Sheikh Awadz SA, Anwar MP
    ScientificWorldJournal, 2013;2013:695404.
    PMID: 24260020 DOI: 10.1155/2013/695404
    This study investigated the allelopathic effect of Axonopus compressus litter on Asystasia gangetica and Pennisetum polystachion. In experiment 1 the bioassays with 0, 10, 30, and 50 g L⁻¹ of aqueous A. compressus litter leachate were conducted. Experiment 2 was carried out by incorporating 0, 10, 20, 30, 40, and 50 g L⁻¹ of A. compressus litter leachate into soil. In experiment 3, the fate of A. compressus litter leachate phenolics in the soil was investigated. A. compressus leachates did not affect the germination percentage of A. gangetica and P. polystachion, but delayed germination of A. gangetica seeds and decreased seed germination time of P. polystachion. A. compressus litter leachates affected weeds hypocotyl length. Hypocotyl length reductions of 18 and 31% were observed at the highest concentration (50 g L⁻¹) compared to the control in A. gangetica and P. polystachion, respectively. When concentration of A. compressus litter leachate-amended soil increased A. gangetica and P. polystachion seedling shoot length, root length, seedling weight and chlorophyll concentration were not affected. The 5-week decomposition study of A. compressus showed that the phenolic compounds in A. compressus litter abruptly decreased about 52% after two weeks and remained steady until the end of the incubation.
    Matched MeSH terms: Poaceae/classification*
  10. Fulltext Comparative study of understorey birds diversity inhabiting lowland rainforest virgin jungle reserve and regenerated forest
    Nor Hashim E, Ramli R
    ScientificWorldJournal, 2013;2013:676507.
    PMID: 24453888 DOI: 10.1155/2013/676507
    A comparative study of understorey birds inhabiting different habitats, that is, virgin jungle reserve (VJR) and regenerated forest (RF), was conducted in Ulu Gombak Forest Reserve and Selangor and Triang Forest Reserve, Negeri Sembilan, Peninsular Malaysia. The objective of this study was to assess the diversity of understorey birds in both habitats and the effects of forest regeneration on the understorey bird community. The mist-netting method was used to capture understorey birds inhabiting both habitats in both locations. Species composition and feeding guild indicated that understorey bird populations were similar in the two habitats. However, the number of secondary forest species such as Little spiderhunter (Arachnothera longirostra) in VJR is increasing due to its proximity to RF. This study discovered that RFs in both study areas are not yet fully recovered. However, based on the range of species discovered, the RFs have conservation value and should be maintained because they harbour important forest species such as babblers and flycatchers. The assessment of the community structure of understorey birds in VJR and RF is important for forest management and conservation, especially where both habitats are intact.
    Matched MeSH terms: Birds/classification*
  11. Fulltext Design and characterization of a 52K SNP chip for goats
    Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, et al.
    PLoS One, 2014;9(1):e86227.
    PMID: 24465974 DOI: 10.1371/journal.pone.0086227
    The success of Genome Wide Association Studies in the discovery of sequence variation linked to complex traits in humans has increased interest in high throughput SNP genotyping assays in livestock species. Primary goals are QTL detection and genomic selection. The purpose here was design of a 50-60,000 SNP chip for goats. The success of a moderate density SNP assay depends on reliable bioinformatic SNP detection procedures, the technological success rate of the SNP design, even spacing of SNPs on the genome and selection of Minor Allele Frequencies (MAF) suitable to use in diverse breeds. Through the federation of three SNP discovery projects consolidated as the International Goat Genome Consortium, we have identified approximately twelve million high quality SNP variants in the goat genome stored in a database together with their biological and technical characteristics. These SNPs were identified within and between six breeds (meat, milk and mixed): Alpine, Boer, Creole, Katjang, Saanen and Savanna, comprising a total of 97 animals. Whole genome and Reduced Representation Library sequences were aligned on >10 kb scaffolds of the de novo goat genome assembly. The 60,000 selected SNPs, evenly spaced on the goat genome, were submitted for oligo manufacturing (Illumina, Inc) and published in dbSNP along with flanking sequences and map position on goat assemblies (i.e. scaffolds and pseudo-chromosomes), sheep genome V2 and cattle UMD3.1 assembly. Ten breeds were then used to validate the SNP content and 52,295 loci could be successfully genotyped and used to generate a final cluster file. The combined strategy of using mainly whole genome Next Generation Sequencing and mapping on a contig genome assembly, complemented with Illumina design tools proved to be efficient in producing this GoatSNP50 chip. Advances in use of molecular markers are expected to accelerate goat genomic studies in coming years.
    Matched MeSH terms: Goats/classification
  12. Fulltext Characterisation of Asian snakehead murrel Channa striata (Channidae) in Malaysia: an insight into molecular data and morphological approach
    Song LM, Munian K, Abd Rashid Z, Bhassu S
    ScientificWorldJournal, 2013;2013:917506.
    PMID: 24396312 DOI: 10.1155/2013/917506
    Conservation is imperative for the Asian snakeheads Channa striata, as the species has been overfished due to its high market demand. Using maternal markers (mitochondrial cytochrome c oxidase subunit 1 gene (COI)), we discovered that evolutionary forces that drove population divergence did not show any match between the genetic and morphological divergence pattern. However, there is evidence of incomplete divergence patterns between the Borneo population and the populations from Peninsular Malaysia. This supports the claim of historical coalescence of C. striata during Pleistocene glaciations. Ecological heterogeneity caused high phenotypic variance and was not correlated with genetic variance among the populations. Spatial conservation assessments are required to manage different stock units. Results on DNA barcoding show no evidence of cryptic species in C. striata in Malaysia. The newly obtained sequences add to the database of freshwater fish DNA barcodes and in future will provide information relevant to identification of species.
    Matched MeSH terms: Fishes/classification*
  13. Description of Goussia kuehae n. sp. (Apicomplexa: Eimeriidae) infecting the Asian seabass, Lates calcarifer (Bloch) (Perciformes: Latidae), cultured in Malaysian fish farms
    Székely C, Borkhanuddin MH, Shaharom F, Embong MS, Molnár K
    Syst Parasitol, 2013 Nov;86(3):293-9.
    PMID: 24163029 DOI: 10.1007/s11230-013-9448-1
    Culturing fishes in marine cages is a rapidly developing area of marine aquaculture. The Asian seabass Lates calcarifer (Bloch) is a fast growing good quality fish that is readily cultured in intensive systems in the South Asian region and in Malaysia in particular. Although several papers have been published to date on viral, bacterial, parasitic and fungal organisms causing diseases in the Asian seabass, the occurrence of a coccidian infection in this species has only recently been recorded. We collected sporulated and unsporulated oöcysts of a new species of Goussia Labbé, 1986, from the mucus covering the epithelium of the intestine of L. calcarifer. This paper provides a description of Goussia kuehae n. sp. Sporulated oöcysts of this species are ellipsoidal, 37-40 μm in length and 28-30 μm in width. The ellipsoidal sporocysts are relatively small, 15.2-17 × 5.7-8 μm, and located loosely in the oöcyst. There are residual bodies both in the oöcysts and the sporocysts. Goussia kuehae n. sp. differs from all known species of Goussia in the large size of the oöcysts and in having two types of oöcyst residuum.
    Matched MeSH terms: Eimeriidae/classification*
  14. Effective hospital waste classification to overcome occupational health issues and reduce waste disposal cost
    Bai VR, Vanitha G, Zainal Ariff AR
    Infect Control Hosp Epidemiol, 2013 Nov;34(11):1234-5.
    PMID: 24113615 DOI: 10.1086/673461
    Matched MeSH terms: Medical Waste/classification*
  15. [Tropical monsoon forests of Vietnam (results of 20 years of phytoecological research)]
    Kuznetsov AN, Kuznetsova SP
    Izv. Akad. Nauk. Ser. Biol., 2013 Mar-Apr;?(2):206-16.
    PMID: 23789426
    This study was carried out during the period 1989-2011. The following areas were included: Vietnam, Laos, Cambodia, Indonesia, and Malaysia. Climax tropical forest and anthropogenically transformed ecosystems, including those damaged by the chemical warfare program of the United States in Vietnam, were investigated. Some regularities in the structure dynamics and functioning of forests ecosystems under a tropical monsoon climate have been revealed. The principles of classification of tropical forests have been elaborated. The major results of investigation of the tropical monsoon forests in Vietnam are given.
    Matched MeSH terms: Trees/classification*
  16. Functional, thermal and molecular behaviours of ozone-oxidised cocoyam and yam starches
    Oladebeye AO, Oshodi AA, Amoo IA, Karim AA
    Food Chem, 2013 Nov 15;141(2):1416-23.
    PMID: 23790933 DOI: 10.1016/j.foodchem.2013.04.080
    Ozone-oxidised starches were prepared from the native starches isolated from white and red cocoyam, and white and yellow yam cultivars. The native and oxidised starches were evaluated for functional, thermal and molecular properties. The correlations between the amount of reacted ozone and carbonyl and carboxyl contents of the starches were positive, as ozone generation time (OGT) increased. Significant differences were obtained in terms of swelling power, solubility, pasting properties and textural properties of the native starches upon oxidation. The DSC data showed lower transition temperatures and enthalpies for retrograded gels compared to the gelatinized gels of the same starch types. The native starches showed CB-type XRD patterns while the oxidised starches resembled the CA-type pattern. As amylose content increased, amylopectin contents of the starches decreased upon oxidation. Similarly, an increase in Mw values were observed with a corresponding decrease in Mn values upon oxidation.
    Matched MeSH terms: Dioscorea/classification
  17. Fulltext Trends of dengue infections in Malaysia, 2000-2010
    Mia MS, Begum RA, Er AC, Abidin RD, Pereira JJ
    Asian Pac J Trop Med, 2013 Jun;6(6):462-6.
    PMID: 23711707 DOI: 10.1016/S1995-7645(13)60075-9
    OBJECTIVE: To analyze trends of dengue incidences and deaths in Malaysia from 2000 to 2010 as well as the predominant dengue virus serotypes during the last decade.

    METHODS: We used the national data on annual reported cases, deaths, incidence rate, mortality rate, and case fatality rate of dengue fever (DF) and dengue hemorrhagic fever (DHF) as well as dengue virus serotypes prevalent in Malaysia during the last decade. Trend/ regression lines were fitted to investigate the trend of dengue incidences and deaths due to the disease for a 11-year period (2000-2010). For the distribution of national incidence rate, mortality rate, and case fatality rate of DF and DHF, descriptive statistics using mean and 95% confidence intervals (CI 39) for means, and range were applied.

    RESULTS: The number of dengue cases and number of deaths have increased, on average, by 14% and 8% per year respectively. The average annual incidence rate of DF per 100 000 populations was higher as compared to that of DHF. Conversely, the yearly mean mortality rate of DHF per 100 000 populations was greater than that of DF. The simultaneous circulation of all four dengue serotypes has been found in Malaysia. But a particular dengue virus serotype predominates for at least two years before it becomes replaced by another serotype.

    CONCLUSIONS: The dengue situation in Malaysia has worsened with an increasing number of reported cases and deaths during the last decade. The increasing trend of dengue highlights the need for a more systematic surveillance and reporting of the disease.

    Matched MeSH terms: Dengue Virus/classification
  18. Fulltext Population structure of the blood clam (Tegillarca granosa) in China based on microsatellite markers
    Wang YJ, Zeng QG, Xu LN
    Genet. Mol. Res., 2013;12(2):892-900.
    PMID: 23613236 DOI: 10.4238/2013.April.2.6
    The blood clam, Tegillarca granosa, is widely cultivated in China. We isolated 6 microsatellite loci from T. granosa and used them to investigate genetic diversity and population structure of 5 widely distributed populations of blood clam collected from eastern and southeastern China. The allele number per locus varied from 4 to 9, and the polymorphism information content value was 0.301 to 0.830. The mean observed and expected heterozygosities varied from 0.304 to 0.460 and 0.556 to 0.621, respectively; the population from Yueqing had the smallest observed heterozygosity. In the neighbor-joining tree, Shandong, Fenghua and Yueqing populations clustered together, and there was geographic divergence between Shandong and Guangxi populations. Some microsatellite loci that were isolated from these mainland China samples were not found in blood clams collected from Malaysia.
    Matched MeSH terms: Arcidae/classification
  19. Fulltext Discovery of Trichuris landak n. sp. by Endang Purwaningsih
    Huat LB
    Asian Pac J Trop Biomed, 2013 Apr;3(4):314.
    PMID: 23620858 DOI: 10.1016/S2221-1691(13)60070-2
    Matched MeSH terms: Trichuris/classification*
  20. In vitro fermentation of commercial α-gluco-oligosaccharide by faecal microbiota from lean and obese human subjects
    Sarbini SR, Kolida S, Gibson GR, Rastall RA
    Br J Nutr, 2013 Jun;109(11):1980-9.
    PMID: 23116939 DOI: 10.1017/S0007114512004205
    The fermentation selectivity of a commercial source of a-gluco-oligosaccharides (BioEcolians; Solabia) was investigated in vitro. Fermentation by faecal bacteria from four lean and four obese healthy adults was determined in anaerobic, pH-controlled faecal batch cultures. Inulin was used as a positive prebiotic control. Samples were obtained at 0, 10, 24 and 36 h for bacterial enumeration by fluorescent in situ hybridisation and SCFA analyses. Gas production during fermentation was investigated in non-pH-controlled batch cultures. a-Gluco-oligosaccharides significantly increased the Bifidobacterium sp. population compared with the control. Other bacterial groups enumerated were unaffected with the exception of an increase in the Bacteroides–Prevotella group and a decrease in Faecalibacterium prausnitzii on both a-gluco-oligosaccharides and inulin compared with baseline. An increase in acetate and propionate was seen on both substrates. The fermentation of a-gluco-oligosaccharides produced less total gas at a more gradual rate of production than inulin. Generally, substrates fermented with the obese microbiota produced similar results to the lean fermentation regarding bacteriology and metabolic activity. No significant difference at baseline (0 h) was detected between the lean and obese individuals in any of the faecal bacterial groups studied.
    Matched MeSH terms: Bacteria/classification
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