Displaying publications 261 - 280 of 2547 in total

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  1. Towards a better future for DNA barcoding: Evaluating monophyly- and distance-based species identification using COI gene fragments of Dacini fruit flies
    Doorenweerd C, San Jose M, Leblanc L, Barr N, Geib SM, Chung AYC, et al.
    Mol Ecol Resour, 2024 Aug;24(6):e13987.
    PMID: 38956928 DOI: 10.1111/1755-0998.13987
    The utility of a universal DNA 'barcode' fragment (658 base pairs of the Cytochrome C Oxidase I [COI] gene) has been established as a useful tool for species identification, and widely criticized as one for understanding the evolutionary history of a group. Large amounts of COI sequence data have been produced that hold promise for rapid species identification, for example, for biosecurity. The fruit fly tribe Dacini holds about a thousand species, of which 80 are pests of economic concern. We generated a COI reference library for 265 species of Dacini containing 5601 sequences that span most of the COI gene using circular consensus sequencing. We compared distance metrics versus monophyly assessments for species identification and although we found a 'soft' barcode gap around 2% pairwise distance, the exceptions to this rule dictate that a monophyly assessment is the only reliable method for species identification. We found that all fragments regularly used for Dacini fruit fly identification >450 base pairs long provide similar resolution. 11.3% of the species in our dataset were non-monophyletic in a COI tree, which is mostly due to species complexes. We conclude with recommendations for the future generation and use of COI libraries. We revise the generic assignment of Dacus transversus stat. rev. Hardy 1982, and Dacus perpusillus stat. rev. Drew 1971 and we establish Dacus maculipterus White 1998 syn. nov. as a junior synonym of Dacus satanas Liang et al. 1993.
    Matched MeSH terms: Tephritidae/classification
  2. Genetic analysis of saffold virus-Penang in relation to other newly discovered saffold viruses
    Voon K, Ng QM, Yu M, Wang LF, Chua KB
    Southeast Asian J Trop Med Public Health, 2012 Jul;43(4):917-26.
    PMID: 23077814
    Viruses in the family Picornaviridae are classified into nine genera. Within the family Picornaviridae, two species: Encephalomyocarditis virus and Theilovirus, are listed under the genus Cardiovirus. A novel Theilovirus, Saffold virus (SAFV), was first reported in 2007. Since then, numerous SAFV isolates have been detected around the world and genetic recombinations have been reported among them. In 2009, SAFV-Penang was isolated from a febrile child with influenza-like illness in Malaysia. SAFV-Penang is a genotype 3 SAFV. In this study we investigated the genome features of SAFV-Penang to exclude the possibility it is a recombinant variant. SAFV-Penang was found not to be a recombinant variant but to have three unique non-synonymous substitutions, alanine [A689], lysine [K708] and isoleucine [I724] in the VP1 protein.
    Matched MeSH terms: Theilovirus/classification
  3. Cytogenetic studies of some species complexes of Anopheles in Thailand and Southeast Asia
    Baimai V, Green CA, Andre RG, Harrison BA, Peyton EL
    Southeast Asian J Trop Med Public Health, 1984 Dec;15(4):536-46.
    PMID: 6543543
    Recent studies on cytogenetics, behavioral, geographical and distinct morphological characters on adult, pupal and larval stages have revealed that "balabacensis" is a species complex. Anopheles dirus the mainland species, is distributed widely in Thailand and is renowned for its role as primary vector of human malarial parasites. Further, evidence from cytogenetic and taxonomic studies suggests that "An. dirus" is a species complex comprising at least four distinct species provisionally designated: dirus A, B, C and D. These cryptic species are distinguishable only partially morphologically, but can be separated on the basis of metaphase chromosomes using the Giemsa and Hoechst 33258 staining techniques. Apparently, these siblings show distinct patterns of geographic distribution in Thailand and Peninsular Malaysia. The recognition of dirus as a complex of species in Thailand and Peninsular Malaysia requires a re-evaluation of the role that the individual members of this complex have in the transmission of malaria parasites in this region. Cytological analysis of gene rearrangements in ovarian polytene chromosomes has shown that An. maculatus is a sibling-species complex consisting of at least four species in Thailand provisionally designated: maculatus A, B, C and G. These siblings are sympatric in some populations. Furthermore, species B is so highly polymorphic for chromosome rearrangements that four geographic forms can be recognized. It is not known whether these four forms are subspecies or yet further species within the species B complex. These sibling-species must be differentiated in order to understand any differential capabilities in their transmission of human malaria parasites. Anopheles nivipes was elevated from synonymy under An. philippinensis to full species status by Reid, a decision recently confirmed by cross mating experiments. The Thailand Malaria Division does not differentiate these two species and only identifies An. philippinensis, yet, An. nivipes is by far the most common of the two species in Thailand. Furthermore, preliminary surveys of the ovarian polytene chromosomes of several widely separated populations of An. nivipes in Thailand have revealed at least two distinct chromosomal types of nivipes based on fixed inversions on the X chromosomes.
    Matched MeSH terms: Anopheles/classification
  4. Enzyme biotypes of Helicobacter pylori isolated from Penang, Peninsular Malaysia
    Uyub AM, Azlan AA
    Southeast Asian J Trop Med Public Health, 2000 Dec;31(4):693-6.
    PMID: 11414414
    A total of 52 clinical strains of Helicobacter pylori were characterized on the basis of preformed enzyme production with API ZYM kits. Using the biotyping schemes as defined by Reina and Alomar (1989), Kung et al (1989) and Matsumoto et al (1996), 15.3% (8/52), 13.5% (7/52) and 11.5% (6/52) of the isolates were not biotypable, respectively. Two enzymes, valine arylamidase and cystine arylamidase could be additionally used to differentiate between isolates. Our isolates were either negative or positive for both the enzymes or positive only for cystine arylamidase. We propose the incorporation of these two enzymes into the Matsumoto et al (1996) biotyping scheme to biotype strains into additional enzyme biotypes.
    Matched MeSH terms: Helicobacter pylori/classification*
  5. Fulltext Pulmonary pathology in rabbits infected with the Baling and Koyan strains of Schistosoma malayensis
    Shekhar KC, Pathmanathan R
    Southeast Asian J Trop Med Public Health, 1992 Dec;23(4):711-5.
    PMID: 1298078
    Two distinct strains of Schistosoma malayensis exist in Malaysia (designated the Baling and Koyan strains). Both these strains show intraspecific variations in pathology (Greer et al, 1988). To evaluate the differences in the pulmonary pathology resulting from infections of the two different strains of Malaysian schistosome, a total of 20 experimental rabbits were infected, 10 each with cercariae of the Koyan strains. Pathological changes were studied over a period of 28 weeks. Granulomas in the lung occurring as a result of infection with the Baling strain were compared with those caused by infection with the Koyan strain. Although both strains produced parenchymatous and alveolar lesions, granulomas caused by the Baling strain of Malaysian schistosome were more numerous and larger (when comparing mean diameter as well as area of granuloma, p < 0.05). In addition, pulmonary vascular hypertensive changes were present in Baling strain infected rabbits. These comprised of pulmonary arteriolar endothelial swelling and damage, intimal elastosis and medial hypertrophy. Angiitis and pulmonary periphlebitis were also noted occasionally. In contrast, Koyan strain infection resulted in fewer and smaller granulomas. Pulmonary vascular changes were minimal.
    Matched MeSH terms: Schistosoma/classification*
  6. The sensory receptors of two cercariae from Malaysia: Trichobilharzia brevis (Schistosomatidae) and Haplorchis Pumilio (Heterophyidae)
    Bayssade-Dufour C, Ow-Yang CK
    Southeast Asian J Trop Med Public Health, 1975 Sep;6(3):338-42.
    PMID: 1221503
    A description of sensory receptors of Trichobilharzia brevis is given. They are compared with the five Schistosomatidae described by Richard (1971), namely, Trichobilharzia ocellata, schistosoma mansoni, S. bovis, S; haematobium and S. rodhaini. All these species display very similar chaetotaxic characters. In the study of the cercaria of Haplorchis pumilio, comparison with the few Opisthorchioidea cercarial sensory organs already known has enabled the authors to characterise the chaetotaxy for this superfamily.
    Matched MeSH terms: Heterophyidae/classification
  7. Comparative morphology of genital cones of genus Ancylostoma Dubini, 1843
    Setasuban P
    Southeast Asian J Trop Med Public Health, 1975 Jun;6(2):230-4.
    PMID: 1166351
    Male worms of Ancylostoma braziliense, A. ceylanicum, A. kusimaense, A. malayanum, A. duodenale, A. caninum, A. tubaeforme, Agriostomum vryburgi and Cyclodontostomum purvisi have the external appendages beside the anogenital aperture. These anogenital structures are morphologically similar and are assumed to be homologous among the species with three pairs of teeth or more. In hookworms with two pairs of teeth, the anogenital structures are complex. Anogenital features can be used as a taxonomic character in separating the species.
    Matched MeSH terms: Ancylostoma/classification
  8. Revision of Sarcocystis orientalis Zaman and Colley, 1975
    Zaman V
    Southeast Asian J Trop Med Public Health, 1975 Dec;6(4):603.
    PMID: 818718
    Matched MeSH terms: Sarcocystis/classification*
  9. Fulltext A taxonomic index, with names of descriptive authorities of termite genera and species: an accompaniment to Biology of Termites: A Modern Synthesis (Bignell DE, Roisin Y, Lo N, Editors. 2011. Springer, Dordrecht. 576 pp.)
    Bignell DE, Jones DT
    J Insect Sci, 2014;14:81.
    PMID: 25368037 DOI: 10.1093/jis/14.1.81
    Biology of Termites: A Modern Synthesis (Bignell DE, Roisin Y, Lo N, (Editors), Springer, Dordrecht, 576pp, ISBN 978-90-481-3976-7, e-ISBN 978-90-481-3977-4, DOI 10.1007/978-90-481-3977-4) was published in 2011. With the agreement of the publishers, we give a taxonomic index of the book comprising 494 termite entries, 103 entries of other multicellular animal species mentioned as associates or predators of termites, with 9 fungal, 60 protist, and 64 prokaryote identities, which are listed as termite symbionts (sensu stricto). In addition, we add descriptive authorities for living (and some fossil) termite genera and species. Higher taxonomic groupings for termites are indicated by 25 code numbers. Microorganisms (prokaryotes, protists, and fungi) are listed separately, using broad modern taxonomic affiliations from the contemporary literature of bacteriology, protozoology, and mycology.
    Matched MeSH terms: Isoptera/classification*
  10. Fulltext Metabolite Fingerprinting Using 1H-NMR Spectroscopy and Chemometrics for Classification of Three Curcuma Species from Different Origins
    Nurani LH, Rohman A, Windarsih A, Guntarti A, Riswanto FDO, Lukitaningsih E, et al.
    Molecules, 2021 Dec 16;26(24).
    PMID: 34946709 DOI: 10.3390/molecules26247626
    Curcuma longa, Curcuma xanthorrhiza, and Curcuma manga have been widely used for herbal or traditional medicine purposes. It was reported that turmeric plants provided several biological activities such as antioxidant, anti-inflammatory, hepatoprotector, cardioprotector, and anticancer activities. Authentication of the Curcuma species is important to ensure its authenticity and to avoid adulteration practices. Plants from different origins will have different metabolite compositions because metabolites are affected by soil nutrition, climate, temperature, and humidity. 1H-NMR spectroscopy, principal component analysis (PCA), and orthogonal projections to latent structures-discriminant analysis (OPLS-DA) were used for authentication of C. longa, C. xanthorrhiza, and C. manga from seven different origins in Indonesia. From the 1H-NMR analysis it was obtained that 14 metabolites were responsible for generating classification model such as curcumin, demethoxycurcumin, alanine, methionine, threonine, lysine, alpha-glucose, beta-glucose, sucrose, alpha-fructose, beta-fructose, fumaric acid, tyrosine, and formate. Both PCA and OPLS-DA model demonstrated goodness of fit (R2 value more than 0.8) and good predictivity (Q2 value more than 0.45). All OPLS-DA models were validated by assessing the permutation test results with high value of original R2 and Q2. It can be concluded that metabolite fingerprinting using 1H-NMR spectroscopy and chemometrics provide a powerful tool for authentication of herbal and medicinal plants.
    Matched MeSH terms: Curcuma/classification*
  11. Fulltext Simple and efficient estimation of photovoltaic cells and modules parameters using approximation and correction technique
    Muhammad FF, Karim Sangawi AW, Hashim S, Ghoshal SK, Abdullah IK, Hameed SS
    PLoS One, 2019;14(5):e0216201.
    PMID: 31048867 DOI: 10.1371/journal.pone.0216201
    The behavior of solar cells and modules under various operational conditions can be determined effectively when their intrinsic parameters are accurately estimated and used to simulate the current-voltage (I-V) characteristics. This work proposed a new computational approach based on approximation and correction technique (ACT) for simple and efficient extraction of solar cells and modules parameters from the single-diode model. In this technique, an approximated value of series resistance (Rs) was first derived and used to determine the initial value of parallel resistance (Rp). Later, the final corrected values of Rs and Rp were obtained by resubstituting their approximated values in a five-loop iteration using the manipulated equations. For rapid evaluation and validation of the proposed technique, a software application was also created using MATLAB program. The correctness and robustness of the proposed technique was validated on five types of solar cells and modules operated at varied temperatures and irradiances. The lowest RMSE value was achieved for RTC France (7.78937E-4) and PVM 752 GaAs (2.10497E-4) solar cell. The legitimacy of ACT extracted parameters was established using a simple yet competitive implementation approach wherein the performance of the developed technique was compared with several state-of-the-art methods recently reported in the literature.
    Matched MeSH terms: Electric Impedance/classification
  12. Fulltext The effects of palm oil on serum lipid profiles: A systematic review and meta-analysis
    Hisham MDB, Aziz Z, Huin WK, Teoh CH, Jamil AHA
    Asia Pac J Clin Nutr, 2020;29(3):523-536.
    PMID: 32990612 DOI: 10.6133/apjcn.202009_29(3).0011
    BACKGROUND AND OBJECTIVES: Current guidelines recommend reducing intake of diets rich in saturated fats and replacing it with diets rich in unsaturated fats. Palm oil contains a high amount of saturated fatty acids, but its effect on serum lipid levels is unclear. The study aimed to compare the effects of palm oil consumption with other edible oils rich in monounsaturated fatty acids (MUFAs) and polyunsaturated fatty acids (PUFAs) on serum lipid profiles.

    METHODS AND STUDY DESIGN: We searched Medline, Embase, Cochrane Central Registry of Controlled Trials and CINAHL. Clinical trials were eligible if they compared palm oil-rich diets with diets rich in MUFAs or PUFAs. We pooled results of included studies using a random effects model and assessed the quality of the evidence and certainty of conclusions using the GRADE approach.

    RESULTS: Intake of palm oil intake compared to oils rich in MUFA was associated with increased levels of total cholesterol (TC) [mean difference (MD)=0.27 mmol/L; 95% CI 0.08 to 0.45], LDL-C (MD=0.20 mmol/L; 95% CI 0.02 to 0.37) and HDL-C (MD=0.06 mmol/L; 95% CI 0.02 to 0.10). Similarly, for comparison with oils rich in PUFAs, palm oil showed increased in TC (MD=0.38 mmol/L; 95% CI 0.14 to 0.62), LDL-C (MD= 0.44 mmol/L; 95% CI 0.01 to 0.88) and HDL-C (MD=0.08 mmol/L; 95% CI 0.03 to 0.13). For both comparisons, there were no significant effects on triglycerides.

    CONCLUSIONS: Even though palm oil increases marginally the level of serum lipids, the evidence is mostly of low to moderate quality.

    Matched MeSH terms: Dietary Fats/classification
  13. Survey of microsporidan hyperparasites of trematode larvae from Malaysian snails
    Colley FC, Ow-Yang CK
    Southeast Asian J Trop Med Public Health, 1973 Jun;4(2):270-1.
    PMID: 4201357
    Matched MeSH terms: Apicomplexa/classification*
  14. A new record of Platynosomum proxilliciens in Malaysian crows (Trematoda: Dicrocoeliidae)
    Singh M, Sinniah B
    Southeast Asian J Trop Med Public Health, 1980 Mar;11(1):148.
    PMID: 7403950
    Matched MeSH terms: Trematoda/classification
  15. A new species of Simulium (Gomphostilbia) (Diptera: Simuliidae) from Malaysia, with keys to 32 species of the Simulium ceylonicum species-group
    Takaoka H, Sofian-Azirun M, Ya'cob Z, Hashim R, Otsuka Y
    J Med Entomol, 2014 May;51(3):517-28.
    PMID: 24897845
    Simulium (Gomphostilbia) leparense sp. nov. is described from females, males, and pupae collected from Peninsular Malaysia. This new species is assigned to the ceylonicum species-group of the subgenus Gomphostilbia, and is characterized by the female and male scuta covered with dark-brown short hairs, smaller number of male upper-eye facets, presence of shiny paired spots on the male abdominal segments 2-8, and absence of grapnel-shaped hooklets on the pupal abdominal segment 9. The male and pupa of S. capillatum Takaoka, which was originally described from larvae collected from Sarawak and Sabah, are described for the first time. Keys to identify all 32 species of the Simulium ceylonicum species-group including 27 species from other countries are provided for females, males, pupae, and mature larvae.
    Matched MeSH terms: Larva/classification; Pupa/classification; Simuliidae/classification*
  16. Two new species of Simulium (Gomphostilbia) (Diptera: Simuliidae) from Cameron's Highlands, Peninsular Malaysia, with keys to 21 species of the Simulium asakoae species-group
    Takaoka H, Sofian-Azirun M, Ya'cob Z, Hashim R
    Zootaxa, 2014;3765:54-68.
    PMID: 24870884 DOI: 10.11646/zootaxa.3765.1.3
    Two new black fly species, Simulium (Gomphostilbia) brinchangense and S. (G.) tanahrataense, are described on the basis of reared adult females, males, pupae and larvae from Cameron's Highlands, Peninsular Malaysia. These new species are assigned to the asakoae species-group within Simulium (Gomphostilbia) and taxonomic notes are given to distinguish each new species from six known species in Malaysia. Revised keys to identify all 21 species including 13 species from other countries are provided for females, males, pupae and mature larvae. The species diversity of the asakoae species-group in Cameron's Highlands is briefly noted.
    Matched MeSH terms: Diptera/classification*; Larva/classification; Pupa/classification
  17. Fulltext Grain sterility in relation to dry mass production and distribution in rice (Oryza sativa L.)
    Puteh AB, Mondal MM, Ismail MR, Latif MA
    Biomed Res Int, 2014;2014:302179.
    PMID: 24895563 DOI: 10.1155/2014/302179
    The experiment was conducted to investigate potential causes of grain sterility in widely cultivated rice variety in Malaysia, MR219 and its two mutant lines (RM311 and RM109) by examining the source-sink relations. RM311 produced increased dry matter yield both at heading and maturity and also showed higher grain yield with greater proportion of grain sterility than the other two genotypes (RM109 and MR219) resulting in the lowest harvest index (49.68%). In contrast, harvest index was greater in RM109 (53.34%) and MR219 (52.76%) with less grain sterility percentage than MR311 indicating that dry matter partitioning to economic yield was better in RM109 and MR219 than in MR311. Results indicated that dry matter allocation per spikelet from heading to maturity was important for reducing grain sterility in rice. The greater above-ground crop dry matter per spikelet was observed in RM109 and MR219 as compared to high dry matter producing genotype; RM311 implies that poor grain filling may not have resulted from dry matter production or source limitation. These findings suggest that grain sterility or poor grain filling in rice is the result of poor translocation and partitioning of assimilates into grains (sink) rather than of limited biomass production or source limitation.
    Matched MeSH terms: Oryza/classification*; Crops, Agricultural/classification; Plants, Genetically Modified/classification*
  18. Surgical management of tympanojugular paragangliomas with intradural extension, with a proposed revision of the Fisch classification
    Sivalingam S, Konishi M, Shin SH, Lope Ahmed RA, Piazza P, Sanna M
    Audiol. Neurootol., 2012;17(4):243-55.
    PMID: 22584244 DOI: 10.1159/000338418
    Tympanojugular paragangliomas (TJPs) with intradural extension can be successfully treated by a single or staged procedure with low surgical morbidity.
    Matched MeSH terms: Glomus Jugulare Tumor/classification; Paraganglioma, Extra-Adrenal/classification; Skull Base Neoplasms/classification
  19. Fulltext A preliminary study on automated freshwater algae recognition and classification system
    Mosleh MA, Manssor H, Malek S, Milow P, Salleh A
    BMC Bioinformatics, 2012;13 Suppl 17:S25.
    PMID: 23282059 DOI: 10.1186/1471-2105-13-S17-S25
    Freshwater algae can be used as indicators to monitor freshwater ecosystem condition. Algae react quickly and predictably to a broad range of pollutants. Thus they provide early signals of worsening environment. This study was carried out to develop a computer-based image processing technique to automatically detect, recognize, and identify algae genera from the divisions Bacillariophyta, Chlorophyta and Cyanobacteria in Putrajaya Lake. Literature shows that most automated analyses and identification of algae images were limited to only one type of algae. Automated identification system for tropical freshwater algae is even non-existent and this study is partly to fill this gap.
    Matched MeSH terms: Cyanobacteria/classification*; Diatoms/classification*; Chrysophyta/classification*
  20. Simulium (Nevermannia) khunklangense, a new species of black fly (Diptera: Simuliidae) from Chiang Mai, Thailand
    Takaoka H, Srisuka W, Saeung A, Otsuka Y, Choochote W
    Zootaxa, 2013;3694:280-8.
    PMID: 26312290
    Simulium (Nevermannia) khunklangense sp. nov. is described from females, males, pupae and larvae collected in Doi Inthanon National Park, Chiang Mai, Thailand. This new species is placed in the vernum species-group of the subgenus Nevermannia and is similar to S. (N.) chomthongense Takaoka & Srisuka described from Doi Inthanon National Park, Thailand, but is distinguished in the male by the number of enlarged upper-eye facets and the relative width of the hind basitarsus against the hind tibia and femur, and in the pupa by the short common basal stalk of the gill and the cocoon with an anterodorsal bulge or a short anterodorsal projection. Taxonomic notes are provided to separate this new species from five other known species of the vernum species-group, which share an accessory sclerite on the larval abdomen, a rare characteristics in this species-group.
    Matched MeSH terms: Larva/classification; Pupa/classification; Simuliidae/classification*
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