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  1. Florence C. H. Lee, Lu Ping Tan
    MyJurnal
    Introduction: Adenoviruses are important in public health. They are used as indicators for microbial pollution source tracking (MST), and as vaccine vectors. Knowledge of host specificity and pre-existing immunity are critical for the two applications. Bovine and porcine adenoviruses are expected to be widespread in the environment through agriculture. Here we examined if bovine and porcine adenovirus strains are truly distinctive from other adenovirus strains. Methods: 46 adenovirus strains with complete genome were downloaded from the RefSeq database of Gen-Bank. 450 bp of nucleotides each at positions 1- 450, 18001-18450, and 27001 – 27450 of the respective strains were subjected to the Disparity Index Test using Mega 7 software. Analysis focused on four adenovirus strains: Bo-vine B, Bovine D, Porcine C and Porcine 3. The total number of strains that were significantly different (P
  2. Jusoh AR, Mohan SV, Lu Ping T, Tengku Din TADAAB, Haron J, Romli RC, et al.
    Asian Pac J Cancer Prev, 2021 May 01;22(5):1375-1381.
    PMID: 34048164 DOI: 10.31557/APJCP.2021.22.5.1375
    OBJECTIVE: This study aimed to characterize the miRNA expression profiles from plasma samples of our local breast cancer patients in comparison to healthy control by using miRNA PCR Array.

    METHODS: In this study, plasma miRNA profiles from eight early-stage breast cancer patients and nine age-matched (± 2 years) healthy controls were characterized by miRNA array-based approach, followed by differential gene expression analysis, Independent T-test and construction of Receiver Operating Characteristic (ROC) curve to determine the capability of the assays to discriminate between breast cancer and the healthy control.

    RESULTS: Based on the 372-miRNAs microarray profiling, a set of 40 differential miRNAs was extracted regarding to the fold change value at 2 and above. We further sub grouped 40 miRNAs of breast cancer patients that were significantly expressed at 2-fold change and higher. In this set, we discovered that 24 miRNAs were significantly upregulated and 16 miRNAs were significantly downregulated in breast cancer patients, as compared to the miRNA expression of healthy subjects. ROC curve analysis revealed that seven miRNAs (miR-125b-5p, miR-142-3p, miR-145-5p, miR-193a-5p, miR-27b-3p, miR-22-5p and miR-423-5p) had area under curve (AUC) value > 0.7 (AUC p-value < 0.05). Overlapping findings from differential gene expression analysis, ROC analysis, and Independent T-Test resulted in three miRNAs (miR-27b-3p, miR-22-5p, miR-145-5p). Cohen's effect size for these three miRNAs was large with d value are more than 0.95.

    CONCLUSION: miR-27b-3p, miR-22-5p, miR-145-5p could be potential biomarkers to distinguish breast cancer patients from healthy controls. A validation study for these three miRNAs in an external set of samples is ongoing.
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