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Fulltext Comparative study of gut microbiota in wild and captive Malaysian Mahseer (Tor tambroides)

Tan CK, Natrah I, Suyub IB, Edward MJ, Kaman N, Samsudin AA

Microbiologyopen, 2019 05;8(5):e00734.
PMID: 30353678 DOI: 10.1002/mbo3.734

AIMS: The aim of this study was to identify and compare the gut microbial community of wild and captive Tor tambroides through 16S rDNA metagenetic sequencing followed by functions prediction.
METHODS AND RESULTS: The library of 16S rDNA V3-V4 hypervariable regions of gut microbiota was amplified and sequenced using Illumina MiSeq. The sequencing data were analyzed using Quantitative Insights into Microbial Ecology (QIIME) pipeline and Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt). The most abundant bacterial phyla in both wild and captive T. tambroides were Firmicutes, Proteobacteria, Fusobacteria and Bacteroidetes. Cetobacterium spp., Peptostreptococcaceae family, Bacteroides spp., Phosphate solubilizing bacteria PSB-M-3, and Vibrio spp. were five most abundant OTU in wild T. tambroides as compared to Cetobacterium spp., Citrobacter spp., Aeromonadaceae family, Peptostreptococcaceae family and Turicibacter spp. in captive T. tambroides.
CONCLUSION: In this study, the specimens of the wild T. tambroides contain more diverse gut microbiota than of the captive ones. The results suggested that Cetobacterium spp. is one of the core microbiota in guts of T. tambroides. Besides, high abundant Bacteroides spp., Citrobacter spp., Turicibacter spp., and Bacillus spp. may provide important functions in T. tambroides guts.
SIGNIFICANCE AND IMPACT OF THE STUDY: The results of this study provide significant information of T. tambroides gut microbiota for further understanding of their physiological functions including growth and disease resistance.

Matched MeSH terms: Cyprinidae/microbiology*
Fulltext Sibship assignment to the founders of a Bangladeshi Catla catla breeding population

Hamilton MG, Mekkawy W, Benzie JAH

Genet. Sel. Evol., 2019 Apr 29;51(1):17.
PMID: 31035934 DOI: 10.1186/s12711-019-0454-x

Catla catla (Hamilton) fertilised spawn was collected from the Halda, Jamuna and Padma rivers in Bangladesh from which approximately 900 individuals were retained as 'candidate founders' of a breeding population. These fish were fin-clipped and genotyped using the DArTseq platform to obtain, 3048 single nucleotide polymorphisms (SNPs) and 4726 silicoDArT markers. Using SNP data, individuals that shared no putative parents were identified using the program COLONY, i.e. 140, 47 and 23 from the Halda, Jamuna and Padma rivers, respectively. Allele frequencies from these individuals were considered as representative of those of the river populations, and genomic relationship matrices were generated. Then, half-sibling and full-sibling relationships between individuals were assigned manually based on the genomic relationship matrices. Many putative half-sibling and full-sibling relationships were found between individuals from the Halda and Jamuna rivers, which suggests that catla sampled from rivers as spawn are not necessarily representative of river populations. This has implications for the interpretation of past population genetics studies, the sampling strategies to be adopted in future studies and the management of broodstock sourced as river spawn in commercial hatcheries. Using data from individuals that shared no putative parents, overall multi-locus pairwise estimates of Wright's fixation index (FST) were low (≤ 0.013) and the optimum number of clusters using unsupervised K-means clustering was equal to 1, which indicates little genetic divergence among the SNPs included in our study within and among river populations.

Matched MeSH terms: Cyprinidae/genetics
Fulltext Fish Endoparasites from Streams near Paddy Fields in Serian and Padawan, Western Sarawak

FELLICIA INCHING UCHANG, YANG LEE, FREDDY KUOK SAN YEO, YEE LING CHONG

Trends in Undergraduate Research, 2019;2(1):0-0.
MyJurnal

The fish health status and parasitic infection in paddy fields are understudied in Borneo. This study was done to compare the prevalence and abundance of parasites on freshwater fishes in the upstream and downstream rivers of paddy fields. Parasite study on freshwater fishes was done by collecting live fish samples using ten minnow traps with baits at each site in Serian and Padawan, Sarawak, from October 2017 until March 2018. A total of 120 freshwater fishes were examined during this study period. Cold anaesthesia was applied on live samples prior to ectoparasite and endoparasite microscopic screening, which involved scraping of outer body mucous and removal of fish intestines, respectively. No ectoparasites were recovered from the fish samples. A total of 19 (15.83%) fishes from Cyprinids were infected with endoparasites. From these, 58 individuals of endoparasites were recovered. Two groups of parasites, namely Nematoda (Cucullanus sp.) and Trematoda (unidentified), were recovered from the fish intestines. From this study, there was a significant difference between the upstream fishes and downstream fishes in their endoparasite infection at both Triboh Village (p = 0.035) and Annah Rais Village (p = 1.445 × 10-6) using two samples t-test. The endoparasite abundance in fish was higher in the streams where there was less human disturbance. This study may serve as a baseline study on the parasitic infections of freshwater fishes in streams near paddy fields or other agricultural area in Sarawak.

Matched MeSH terms: Cyprinidae
Fulltext Muscle Fatty Acid Content in Selected Freshwater Fish from Bukit Merah Reservoir, Perak, Malaysia

Jaya-Ram A, Fuad F, Zakeyuddin MS, Sah ASRM

Trop Life Sci Res, 2018 Jul;29(2):103-117.
PMID: 30112144 MyJurnal DOI: 10.21315/tlsr2018.29.2.8

One of the oldest reservoirs in Peninsular Malaysia, Bukit Merah Reservoir, is a place in which locals participate in fishing activities. Inland fisheries are important to individuals, society and the environment; whereby they generate a source of income and food security. It is essential to gauge the nutrition value of fish caught in this location as food source, especially in terms of fatty acid composition, to better demonstrate its potential towards the betterment of human health and general well-being. From an initial list of 47 fish species available in Bukit Merah Reservoir, a total of seven edible freshwater fish species were identified, namely tinfoil barb (Barbonymus schwanenfeldii), Javanese barb (Barbonymus gonionotus), hampala barb (Hampala macrolepidota), beardless barb (Cyclocheilichthys apogon), glassfish (Oxygaster anomalura), striped snakehead (Channa striata) and horseface loach (Acantopsis dialuzona), and muscle fatty acid content was analysed to determine their nutritional value. Muscle of cyprinid fish contained substantial amount of omega-3 long-chain polyunsaturated fatty acids (LC-PUFA) compared to fish from Channidae and Cobitidae families. Javanese and tinfoil barbs muscle recorded the highest levels of combined eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) indicating the highest nutritional value comparatively. Unexpectedly, the striped snakehead, a predatory carnivore, contained lower levels of LC-PUFA compared to detrivorous/herbivorous fishes. This further justifies that the omega-3 polyunsaturated fatty acids (PUFA) content in fish muscle varies according to their feeding habits. Even though it has been recommended that marine fish be consumed to improve health to a certain extent, there still are benefits of consuming freshwater fish, as there are several species which contain considerable amounts of beneficial omega-3 PUFA.

Matched MeSH terms: Cyprinidae
Restriction Fragment Length Polymorphisms (RFLPs) analysis of several freshwater fishes of Malaysia

Japning, J.R.R., Esa, Y.B.

Buletin Persatuan Genetik Malaysia, 2005;11(1):0-0.
MyJurnal

The need to detect genetic variation has fueled the development of novel marker systems in fisheries biology. In this study, a simple, fast and cost effective method was used to differentiate between species of freshwater fishes focusing on Malaysian freshwater fishes by employing
Restriction Fragment Length Polymorphisms (RFLPs) analysis of a 470-bp cytochrome b mtDNA segment. RFLP analysis using six restriction enzymes (AluI, BamHI, BsuRI, Csp61, HpaII and SalI) found variations in the digestion profile among most of the fish samples analyzed. Diagnostic digestion profiles were observed among the Hampala fishes, especially between H. macrolepidota and the other Hampala species/forms (using BsuRI and Csp61). Diagnostic digestion profiles were also detected between H.
bimaculata Type A and Type B (using AluI, BamHI, BsuRI and SalI), supporting their status as distinct species. Additionally, unique digestion profiles were observed in other species such as Leptobarbus hosii (Csp61), Osteocheilus hasseltii (Csp61), Osteocheilus sp. (Csp61), Puntioplites bulu (Csp61), Puntius bramoides (AluI), P. sealei (AluI) and Helostoma temmincki (AluI and Csp61), which can be used as genetic markers for discriminating these species. Overall, the RFLP analysis of the cytochrome
b mtDNA segment has proven to be a considerably effective, fast and non-expensive technique to discriminate among several freshwater fish species in Malaysia.

Matched MeSH terms: Cyprinidae
Fulltext Assessment of inhibitive assay for insecticides using acetylcholinesterase from Puntius schwanenfeldii

Mohd Khalizan Sabullah, Mohd Ezuan Khayat

Journal of Biochemistry, Microbiology and Biotechnology, 2015;3(2):26-29.
MyJurnal

In this study, the substrate specificity and the inhibition kinetics of various types of insecticides to the acetylcholinesterase (AChE) from a local fish; Puntius schwanenfeldii were investigated. The substrate specificity determination was done using three thiocholine substrates, which were ATC, PTC and BTC. The results showed that he partially purified cholinesterase from Puntius schwanenfeldii that preferred ATC is a true AChE. The Km and Vmax values of AChE for these substrates were 16.61 mmol and 286.5 U/mg for ATC, 19.92 mmol and 245.3 U/mg for PTC, and 48.64 mmol and 219.6 U/mg for BTC, respectively. The IC50 values for the carbamates bendiocarb, carbaryl, propoxur, carbofuran and methomyl were 0.838, 7.045, 29.441, 1.411 and 8.335 mg/L, respectively, which were comparable to the IC50 values for carbamates from several AChE from fish.

Matched MeSH terms: Cyprinidae
Scale morphologies of freshwater fishes at Tembat Forest Reserve, Terengganu, Malaysia

Farah Ayuni Farinordin, Wan Seribani Wan Nilam, Shahril Mod Husin, Abdullah Samat, Shukor Md. Nor

Sains Malaysiana, 2017;46:1429-1439.

Scales are calcium carbonate and collagen-contained structures embedded within the fish epidermis and useful for
species identification. This study aimed to describe morphological characteristics of scales and use the differences to
prepare keys to species. Fishes were sampled from selected rivers of Tembat Forest Reserve, Hulu Terengganu. Specimens
caught were from 3 families (Cyprinidae, Channidae, Nandidae) and 17 species. Each species was represented by ten
individuals (size ranges 2.5 - 50 cm TL). The scales were removed, soaked in H2
O2
(0.5%), NH3 (0.3%), DH2
O and
mounted between a pair of glass slides for digital photographing. The morphological descriptions were based on types
of scales, distinctiveness of radii arrangement at the anterior field, radii cover, radii distribution, overall shape, focus
position and focus pattern. Keys to species were constructed based on these scale morphological characters described.
Measurements of scale total length (L), total width (W), rostral field length (L1) and caudal field length (L2) of the scales
were taken using Image J software. The inter-specific variation among scales was indicated by L1/L, L2/L, L1/L2 and
W/L indices through multiple comparison tests (ANOVA). It was found that all 17 species showed significant differences
with at least one other species in all four indices. Pristolepis grootii (Bleeker 1852) was the only one that significantly
different (p<0.05) from other 16 species in the first three indices. Species that showed the least significant differences
among species was Probarbus jullieni (Sauvage 1880). The differences among the scales were primarily due to the
different types of scale that was either ctenoid or cycloid.

Matched MeSH terms: Cyprinidae
Myxozoan infection of the Malaysian mahseer, Tor tambroides, of Tasik Kenyir Reservoir, Malaysia: description of a new species Myxobolus tambroides sp.n

Székely C, Shaharom F, Cech G, Mohamed K, Zin NA, Borkhanuddin MH, et al.

Parasitol Res, 2012 Oct;111(4):1749-56.
PMID: 22782473

Tor tambroides, a common and appreciated cyprinid fish of the Tasik Kenyir water reservoir in Malaysia, is one of the species selected for propagation. This fish was first successfully propagated in Malaysia by the Department of Agriculture, Sarawak, Malaysia, and the breeding program continued throughout the country. The gills were frequently infected by a Myxobolus species to be described as Myxobolus tambroides sp. n. The small, 50 to 70 μm, round plasmodia of this species is located intralamellarly. Plasmodia were filled with pyriform myxospores, 9.9 and 7.4 μm wide. In sutural view, the caudal end of the myxospores had a distinctive valvular groove, parallel with the suture. Plasmodia caused deformations on the affected and the neighbouring gill lamellae. The 18S rDNA sequence of M. tambroides sp.n. did not show a close relationship with any other Myxobolus spp., represented in the GenBank. This might be an emerging parasite likely to impact the propagation of this fish.

Matched MeSH terms: Cyprinidae/parasitology*
Opisthorchis viverrini (Poirier, 1886) a trematode parasite of man in West Malaysia

Bisseru B, Chong LK

Trop Geogr Med, 1969 Jun;21(2):138-46.
PMID: 5816416
Matched MeSH terms: Cyprinidae
Fulltext Trace metals contamination potential and health risk assessment of commonly consumed fish of Perak River, Malaysia

Salam MA, Paul SC, Zain RAMM, Bhowmik S, Nath MR, Siddiqua SA, et al.

PLoS One, 2020;15(10):e0241320.
PMID: 33104734 DOI: 10.1371/journal.pone.0241320

The rapid growth of industrial and agricultural activities in Malaysia are leading to the impairment of most of the rivers in recent years through realising various trace metals. This leads to toxicity, particularly when the toxic has entered the food chain. Perak River is one of the most dynamic rivers for the Malaysian population. Therefore, in consideration of the safety issue, this study was conducted to assess the concentration of such metals (Cd, Cu, Zn, Fe, and Pb) in the muscles of most widely consumed fish species (Barbonymus schwanenfeldii, Puntius bulum, Puntius daruphani, Hexanematichthys sagor, Channa striatus, Mystacoleucus marginatus, and Devario regina) from different locations of Perak River, Malaysia by employing inductively coupled plasma optical emission spectroscopy (ICP-OES). Among the trace metals, Fe and Cd were found to be the highest (29.33-148.01 μg/g) and lowest (0.16-0.49 μg/g) concentration in all of the studied species, respectively. Although the estimated daily intakes (μg/kg/day) of Cd (0.65-0.85), Fe (79.27-352.00) and Pb (0.95-12.17) were higher than their reference, the total target hazard quotients values suggested that the local residents would not experience any adverse health effects from its consumption. In contrast, the target cancer risk value suggested that all fish species posed a potential cancer risk due to Cd and cumulative cancer risk values, strongly implying that continuous consumption of studied fish species would cause cancer development to its consumers.

Matched MeSH terms: Cyprinidae